PlantRegMap/PlantTFDB v5.0
Plant Transcription
Factor Database
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Transcription Factor Information
Basic Information? help Back to Top | |||||||||
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TF ID | Pd.00g408720.m01 | ||||||||
Organism | |||||||||
Taxonomic ID | |||||||||
Taxonomic Lineage |
cellular organisms; Eukaryota; Viridiplantae; Streptophyta; Streptophytina; Embryophyta; Tracheophyta; Euphyllophyta; Spermatophyta; Magnoliophyta; Mesangiospermae; eudicotyledons; Gunneridae; Pentapetalae; rosids; fabids; Rosales; Rosaceae; Amygdaloideae; Amygdaleae; Prunus
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Family | C3H | ||||||||
Protein Properties | Length: 347aa MW: 38546.8 Da PI: 7.8559 | ||||||||
Description | C3H family protein | ||||||||
Gene Model |
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Signature Domain? help Back to Top | |||||||
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No. | Domain | Score | E-value | Start | End | HMM Start | HMM End |
1 | zf-CCCH | 31.3 | 3.4e-10 | 97 | 121 | 1 | 26 |
--S---SGGGGTS--TTTTT-SS-SS CS zf-CCCH 1 yktelCrffartGtCkyGdrCkFaHg 26 +kt+lC+ f++ GtC+y +C+FaH+ Pd.00g408720.m01 97 FKTKLCCKFRA-GTCPYVTNCNFAHS 121 69*********.*************8 PP | |||||||
2 | zf-CCCH | 18.6 | 3.3e-06 | 170 | 195 | 1 | 26 |
--S---SGGGGTS--TTTTT-SS-SS CS zf-CCCH 1 yktelCrffartGtCkyGdrCkFaHg 26 yk + C+ f+ C+yGd+C+F H+ Pd.00g408720.m01 170 YKGRHCKKFYTEEGCPYGDNCTFLHD 195 78888********************7 PP | |||||||
3 | zf-CCCH | 43.5 | 5.1e-14 | 227 | 252 | 1 | 26 |
--S---SGGGGTS--TTTTT-SS-SS CS zf-CCCH 1 yktelCrffartGtCkyGdrCkFaHg 26 +kt++C+ + tG+C++G++C+FaHg Pd.00g408720.m01 227 WKTRICNKWELTGYCPFGSKCHFAHG 252 8************************9 PP |
Sequence ? help Back to Top |
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Protein Sequence Length: 347 aa Download sequence |
MVSSLSFGHF EAVDPTAIPT RCFLEVPLCV TRTFWATEDE YRVWNNGDAL ADTMSNSNYD 60 QRQSQSRSGS EPPNKKSRNS QDATSSNRSK AIGKMFFKTK LCCKFRAGTC PYVTNCNFAH 120 SIEELRRPPP NWQEIVAAHE EEKGVSSEPR EEYQIPIVST GYGVETQRSY KGRHCKKFYT 180 EEGCPYGDNC TFLHDEQSKN RESVAISLGP GGYGGAANGA NNKPSNWKTR ICNKWELTGY 240 CPFGSKCHFA HGVAELHRYG GGLVEGDARE SSSAPPDNKQ GGVPSKTPAD TVVVSVPLVP 300 HSDVYHLGVP SQRSSIVNQR PGQRAHQKWK GPDKISRIYG DWIDEIE |
Best hit in Arabidopsis thaliana ? help Back to Top | ||||||
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Hit ID | E-value | Description | ||||
AT1G32360.1 | 1e-123 | C3H family protein |