PlantTFDB
PlantRegMap/PlantTFDB v5.0
Plant Transcription Factor Database
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(e.g., LFY)
Transcription Factor Information
Basic Information | Signature Domain | Sequence | 
Basic Information? help Back to Top
TF ID Pd.00g408330.m01
Organism
Prunus domestica
Taxonomic ID
Taxonomic Lineage
cellular organisms; Eukaryota; Viridiplantae; Streptophyta; Streptophytina; Embryophyta; Tracheophyta; Euphyllophyta; Spermatophyta; Magnoliophyta; Mesangiospermae; eudicotyledons; Gunneridae; Pentapetalae; rosids; fabids; Rosales; Rosaceae; Amygdaloideae; Amygdaleae; Prunus
Family GRAS
Protein Properties Length: 588aa    MW: 65607.5 Da    PI: 5.9155
Description GRAS family protein
Gene Model
Gene Model ID Type Source Coding Sequence
Pd.00g408330.m01genomeGDRView CDS
Signature Domain? help Back to Top
Signature Domain
No. Domain Score E-value Start End HMM Start HMM End
1GRAS421.76.3e-1292185871373
              GRAS   1 lvelLlecAeavssgdlelaqalLarlselaspdgdpmqRlaayfteALaarlarsvselykalppsetseknsseelaalklfsevsPilkf 93 
                       l+elL++cA a+s+++    ++l+++ +  +s +g+p+qRl ay++e+L ar   s+ ++y+al+++e +   s++ l+++++++e++P+lkf
  Pd.00g408330.m01 218 LKELLIACAGALSDNNIDSFDKLIEKARGAVSVSGEPIQRLGAYLVEGLVARKEASGANIYRALRCREPE---SDDLLSYMQILYEICPYLKF 307
                       5799*****************************************************************9...9******************* PP

              GRAS  94 shltaNqaIleavegeervHiiDfdisqGlQWpaLlqaLasRpegppslRiTgvgspesg..skeeleetgerLakfAeelgvpfefnvlvak 184
                       ++++aN aI ea  +e+r+HiiDf+i qG+QW++LlqaLa+Rp+g+p++RiTg+++p s+  + + le++g+rL+ + e++++p+ef+  v  
  Pd.00g408330.m01 308 GYMAANGAIAEACRNEDRIHIIDFQIAQGTQWVTLLQALAARPGGAPHVRITGIDDPLSQyaRGDGLEAVGKRLKAISEKFNIPVEFHG-VPV 399
                       ********************************************************9998999**************************.688 PP

              GRAS 185 rledleleeLrvkpgEalaVnlvlqlhrlldesvsleserdevLklvkslsPkvvvvveqeadhnsesFlerflealeyysalfdsleaklpr 277
                          d++ ++L+v++gEalaVn+ lqlh+++desv+ +++rd +L++vkslsPkv ++veqe+++n+++F++rf+e+leyy a+f+s++++lpr
  Pd.00g408330.m01 400 FAPDVTQDMLDVRHGEALAVNFPLQLHHTPDESVDENNPRDGLLRMVKSLSPKVTTLVEQESNTNTTPFFNRFVETLEYYLAMFESIDVTLPR 492
                       8999***************************************************************************************** PP

              GRAS 278 eseerikvErellgreivnvvacegaerrerhetlekWrerleeaGFkpvplsekaakqaklllrkvksdgyrveeesgslvlgWkdrpLvsv 370
                       +++eri+vE+++l+r+ vnv+aceg+er+erhe ++kW++rl++aGF+++pls+++++ +++llr ++ + y++ e++g+++lgWkdr+L s+
  Pd.00g408330.m01 493 NNKERINVEQHCLARDMVNVIACEGKERVERHELFGKWKSRLTMAGFQQYPLSSYVNSVIRSLLRCYS-EHYTLVERDGAMLLGWKDRNLKSA 584
                       ****************************************************************9999.66********************** PP

              GRAS 371 SaW 373
                       SaW
  Pd.00g408330.m01 585 SAW 587
                       *** PP
Sequence ? help Back to Top
Protein Sequence    Length: 588 aa     Download sequence    
MDSHQHFGFG VTGAGFSYTA PHSTVPSLPT RLLGSLKFDI GNSPNSPFST HFDSDTLTTL  60
SDGQEQHSST ENLSGASPSC NSSFETNSYI HQLSFSPSVD CRRDSLQLYS GRSSLLQDAN  120
SSQNIKHALQ ELESTLMGPD NEEEEVTTPN TSFGESSKRQ TQRSTSWIQE IQEHQGSPVV  180
QRQTSFVSRQ RQLCEFQIEK RHKVIDEGSL KGLPAGNLKE LLIACAGALS DNNIDSFDKL  240
IEKARGAVSV SGEPIQRLGA YLVEGLVARK EASGANIYRA LRCREPESDD LLSYMQILYE  300
ICPYLKFGYM AANGAIAEAC RNEDRIHIID FQIAQGTQWV TLLQALAARP GGAPHVRITG  360
IDDPLSQYAR GDGLEAVGKR LKAISEKFNI PVEFHGVPVF APDVTQDMLD VRHGEALAVN  420
FPLQLHHTPD ESVDENNPRD GLLRMVKSLS PKVTTLVEQE SNTNTTPFFN RFVETLEYYL  480
AMFESIDVTL PRNNKERINV EQHCLARDMV NVIACEGKER VERHELFGKW KSRLTMAGFQ  540
QYPLSSYVNS VIRSLLRCYS EHYTLVERDG AMLLGWKDRN LKSASAWH
Best hit in Arabidopsis thaliana ? help Back to Top
Hit ID E-value Description
AT5G48150.11e-178GRAS family protein