PlantTFDB - Plant Transcription Factor Database @ CBI, PKU

PlantRegMap/PlantTFDB v5.0

Plant Transcription Factor Database

Transcription Factor Information

Basic Information | Signature Domain | Sequence |

Basic Information? help Back to Top

TF ID

Pd.00g400520.m01

Organism

Prunus domestica

Taxonomic ID

3758

Taxonomic Lineage

cellular organisms; Eukaryota; Viridiplantae; Streptophyta; Streptophytina; Embryophyta; Tracheophyta; Euphyllophyta; Spermatophyta; Magnoliophyta; Mesangiospermae; eudicotyledons; Gunneridae; Pentapetalae; rosids; fabids; Rosales; Rosaceae; Amygdaloideae; Amygdaleae; Prunus

Family

Protein Properties

Length: 386aa MW: 43823.4 Da PI: 10.8652

Description

B3 family protein

Gene Model

Gene Model ID	Type	Source	Coding Sequence
Pd.00g400520.m01	genome	GDR	View CDS

Signature Domain? help Back to Top

No.	Domain	Score	E-value	Start	End	HMM Start	HMM End
1	B3	50.6	3.4e-16	265	349	4	89
E-..-HHHHTT-EE--HHH.HTT---..--SEEEEEETTS-EEEEEE..EEETTE.EEE-TTHHHHHHHHT--TT-EEEEEE-SS.SE CS B3 4 vltpsdvlksgrlvlpkkfaeehggkkeesktltledesgrsWevkliyrkksgr.yvltkGWkeFvkangLkegDfvvFkldgr.se 89 v +++++ + g l + k ++eh ++ +++ +l+ ++gr+W v l k++++ + +++GW +Fv++n+L+ gD++vF ++++ ++ Pd.00g400520.m01 265 VVMHPSYIRAGYLHIGAKVIKEHLLN-RGHENAILRVSDGRTWPVSL--GKQGKGiVRFQTGWMKFVQDNQLEIGDVCVFVMTNDiKR 349 5678888889999********666.455689**********..777777799********************98777444 PP

Sequence ? help Back to Top
Protein Sequence Length: 386 aa Download sequence
MKYGDDLSNP VFLKLPSGSE WKIELRRWED KACSSGKSEF PAKRHCGVTS TTRRFIKRTR 60 SAKVIALQRA KAFKSDKPSF IVPMTRSYTN RSFVWLPSDF SFHMTRLSNN SGNVTFRVLD 120 GRTWSLGLKC ERAKPKARFQ AVVIFRAIEA ANTLSPDVHG EQTMSEMEET DEDYDSVELL 180 DYFPPCPKTR KKSPIAPQPS KKNRTCSIST AENNIKSVGG PSRSQKFLKR RLQGPRRMNP 240 VTESRTDRAL LRAKAFRSEY PSSTVVMHPS YIRAGYLHIG AKVIKEHLLN RGHENAILRV 300 SDGRTWPVSL GKQGKGIVRF QTGWMKFVQD NQLEIGDVCV FVMTNDIKRL IDVVLFRATE 360 AAKCTLSGEG NRRPMISSSR KIKREA

Sequence ? help Back to Top

Protein Sequence Length: 386 aa Download sequence

MKYGDDLSNP VFLKLPSGSE WKIELRRWED KACSSGKSEF PAKRHCGVTS TTRRFIKRTR  60
SAKVIALQRA KAFKSDKPSF IVPMTRSYTN RSFVWLPSDF SFHMTRLSNN SGNVTFRVLD  120
GRTWSLGLKC ERAKPKARFQ AVVIFRAIEA ANTLSPDVHG EQTMSEMEET DEDYDSVELL  180
DYFPPCPKTR KKSPIAPQPS KKNRTCSIST AENNIKSVGG PSRSQKFLKR RLQGPRRMNP  240
VTESRTDRAL LRAKAFRSEY PSSTVVMHPS YIRAGYLHIG AKVIKEHLLN RGHENAILRV  300
SDGRTWPVSL GKQGKGIVRF QTGWMKFVQD NQLEIGDVCV FVMTNDIKRL IDVVLFRATE  360
AAKCTLSGEG NRRPMISSSR KIKREA

Best hit in Arabidopsis thaliana ? help Back to Top
Hit ID	E-value	Description
AT3G18990.1	9e-11	B3 family protein