PlantTFDB - Plant Transcription Factor Database @ CBI, PKU

PlantRegMap/PlantTFDB v5.0

Plant Transcription Factor Database

Transcription Factor Information

Basic Information | Signature Domain | Sequence |

Basic Information? help Back to Top

TF ID

Pd.00g399300.m01

Organism

Prunus domestica

Taxonomic ID

3758

Taxonomic Lineage

cellular organisms; Eukaryota; Viridiplantae; Streptophyta; Streptophytina; Embryophyta; Tracheophyta; Euphyllophyta; Spermatophyta; Magnoliophyta; Mesangiospermae; eudicotyledons; Gunneridae; Pentapetalae; rosids; fabids; Rosales; Rosaceae; Amygdaloideae; Amygdaleae; Prunus

Family

LBD

Protein Properties

Length: 942aa MW: 104319 Da PI: 5.2106

Description

LBD family protein

Gene Model

Gene Model ID	Type	Source	Coding Sequence
Pd.00g399300.m01	genome	GDR	View CDS

Signature Domain? help Back to Top

No.	Domain	Score	E-value	Start	End	HMM Start	HMM End
1	DUF260	85.6	6.8e-27	13	106	1	94
DUF260 1 aCaaCkvlrrkCakdCvlapyfpaeqpkkfanvhklFGasnvlkllkalpeeeredamsslvyeAearardPvyGavgvilklqqqleqlkae 93 aCa+Ck +rrkC + C +apyfpa++ ++f+n+ k+FG+sn++++++ + +++r++a++s++ e++ar +dPv+ + + ++l+ l+ ++ + Pd.00g399300.m01 13 ACASCKQQRRKCDETCEMAPYFPASRYSEFQNADKIFGVSNIQNTMAMAAPDQRQAAAESILTEGNARKNDPVQTSRNASKALSLSLSLAHRD 105 7*************************************************************************9999999888888777766 PP DUF260 94 l 94 l Pd.00g399300.m01 106 L 106 6 PP

Sequence ? help Back to Top
Protein Sequence Length: 942 aa Download sequence
MENRDQGAAQ NHACASCKQQ RRKCDETCEM APYFPASRYS EFQNADKIFG VSNIQNTMAM 60 AAPDQRQAAA ESILTEGNAR KNDPVQTSRN ASKALSLSLS LAHRDLRLSV DCFRDLRFCK 120 DERALVCFGD KQRFIGTAGA ASSLMNPKNT ISQIKRLVGR QFSDPVVQRD IKSLPFAVTE 180 GPDGYPLIHA RYLGESRTFT PTQVLGMLFS DLKIIAEKNL NAAVVDCCIG IPVYFTDLQR 240 RAVLDAATIA GLHPLRLFHE TTATALAYGI YKTDLPENDQ LNVAFVDIGH ASMQVCIAGF 300 KKGQLKILAH SFDQSLGGRD FDEVLFHHFA AKFKEEYKID VFQNARACLR LRVACEKLKK 360 MLSANPEAPL NIECLMEEKD VRGFIKRDEF EQISVPILER VKGPLEKALL DAQLSIENIH 420 TVEVVGSGSR VPAIIKILTD FFKKEPRRTM NASECVARGC ALQCAILSPT FKVREFQVNE 480 SFPFSIALSW KGSGPDTQNG AADNNQSTIV FPKGNPIPSI KALTFYRSGT FSVDVQYADV 540 SDLQAPAKIS TYTIGPFQST KGERAKLKVK ARLNLHGIVS VDSATLLEEE EIEVPVTKEQ 600 PKEGAKMETD EAPSDAAPPS SNETDVNMQD AKGTADASGA ENGVPESGDK PVQMETDTKA 660 DAPKRKVKKT NIPVVELVYG GMPPSDVQKA IEKEFEMALQ DRVMEETKDK KNAVEAYVYD 720 TRNKLSDKYQ EFVTEPEREA FIARLQEVED WLYEDGEDET KGVYIAKLEE LKKQGDPIEE 780 RYKEHTERGT VIDQLGYCIN SYREAAMSTD AKFEHIDISD KQKVLNECVE AEAWLREKKQ 840 QQDSLPKYAN PVLLSADVRR KAEALDRFCR PIMTKPKPAP VKPAAPETPT PPPQGNEHQP 900 QGGDANANAG SNENPADGSN EVPLASEEPM ETDKPEAPQS SA

Sequence ? help Back to Top

Protein Sequence Length: 942 aa Download sequence

MENRDQGAAQ NHACASCKQQ RRKCDETCEM APYFPASRYS EFQNADKIFG VSNIQNTMAM  60
AAPDQRQAAA ESILTEGNAR KNDPVQTSRN ASKALSLSLS LAHRDLRLSV DCFRDLRFCK  120
DERALVCFGD KQRFIGTAGA ASSLMNPKNT ISQIKRLVGR QFSDPVVQRD IKSLPFAVTE  180
GPDGYPLIHA RYLGESRTFT PTQVLGMLFS DLKIIAEKNL NAAVVDCCIG IPVYFTDLQR  240
RAVLDAATIA GLHPLRLFHE TTATALAYGI YKTDLPENDQ LNVAFVDIGH ASMQVCIAGF  300
KKGQLKILAH SFDQSLGGRD FDEVLFHHFA AKFKEEYKID VFQNARACLR LRVACEKLKK  360
MLSANPEAPL NIECLMEEKD VRGFIKRDEF EQISVPILER VKGPLEKALL DAQLSIENIH  420
TVEVVGSGSR VPAIIKILTD FFKKEPRRTM NASECVARGC ALQCAILSPT FKVREFQVNE  480
SFPFSIALSW KGSGPDTQNG AADNNQSTIV FPKGNPIPSI KALTFYRSGT FSVDVQYADV  540
SDLQAPAKIS TYTIGPFQST KGERAKLKVK ARLNLHGIVS VDSATLLEEE EIEVPVTKEQ  600
PKEGAKMETD EAPSDAAPPS SNETDVNMQD AKGTADASGA ENGVPESGDK PVQMETDTKA  660
DAPKRKVKKT NIPVVELVYG GMPPSDVQKA IEKEFEMALQ DRVMEETKDK KNAVEAYVYD  720
TRNKLSDKYQ EFVTEPEREA FIARLQEVED WLYEDGEDET KGVYIAKLEE LKKQGDPIEE  780
RYKEHTERGT VIDQLGYCIN SYREAAMSTD AKFEHIDISD KQKVLNECVE AEAWLREKKQ  840
QQDSLPKYAN PVLLSADVRR KAEALDRFCR PIMTKPKPAP VKPAAPETPT PPPQGNEHQP  900
QGGDANANAG SNENPADGSN EVPLASEEPM ETDKPEAPQS SA

Best hit in Arabidopsis thaliana ? help Back to Top
Hit ID	E-value	Description
AT1G06280.1	3e-16	LBD family protein