PlantRegMap/PlantTFDB v5.0
Plant Transcription
Factor Database
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Home TFext BLAST Prediction Download Help About Links PlantRegMap |
Transcription Factor Information
Basic Information? help Back to Top | |||||||||
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TF ID | Pd.00g394940.m01 | ||||||||
Organism | |||||||||
Taxonomic ID | |||||||||
Taxonomic Lineage |
cellular organisms; Eukaryota; Viridiplantae; Streptophyta; Streptophytina; Embryophyta; Tracheophyta; Euphyllophyta; Spermatophyta; Magnoliophyta; Mesangiospermae; eudicotyledons; Gunneridae; Pentapetalae; rosids; fabids; Rosales; Rosaceae; Amygdaloideae; Amygdaleae; Prunus
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Family | C3H | ||||||||
Protein Properties | Length: 263aa MW: 29856.8 Da PI: 8.5432 | ||||||||
Description | C3H family protein | ||||||||
Gene Model |
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Signature Domain? help Back to Top | |||||||
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No. | Domain | Score | E-value | Start | End | HMM Start | HMM End |
1 | zf-CCCH | 22.4 | 2.1e-07 | 72 | 96 | 1 | 26 |
--S---SGGGGTS--TTTTT-SS-SS CS zf-CCCH 1 yktelCrffartGtCkyGdrCkFaHg 26 +kt+lC++f G C+yG C+FaHg Pd.00g394940.m01 72 FKTRLCNNFKM-GNCHYGQGCCFAHG 96 79*********.*************8 PP | |||||||
2 | zf-CCCH | 18.8 | 2.9e-06 | 130 | 150 | 5 | 25 |
--SGGGGTS--TTTTT-SS-S CS zf-CCCH 5 lCrffartGtCkyGdrCkFaH 25 Cr f+ +G C yGd+C++ H Pd.00g394940.m01 130 VCRLFFNGGKCTYGDKCRYPH 150 6*****************977 PP |
Sequence ? help Back to Top |
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Protein Sequence Length: 263 aa Download sequence |
MSDSGPTCQF FAPYLESGDN RHQLKPEFPN ADKDFKDHSD IESHPSKKPK TSEVVLISTI 60 PMAQNKMLPR NFKTRLCNNF KMGNCHYGQG CCFAHGISDL RKTWLNWQGL ETEEDFKART 120 CDHRRTSNDV CRLFFNGGKC TYGDKCRYPH HVTPENIREK SAISILTSGA HIGGSGQFYS 180 KRSLELMKLC GYMAVESRSV QNSRTSSTSM SKLRMGVGAT YHKQVPGMEC NFKWNELEKM 240 SRIYADWIED IPLVHGSSSK AEC |
Best hit in Arabidopsis thaliana ? help Back to Top | ||||||
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Hit ID | E-value | Description | ||||
AT2G35430.1 | 9e-12 | C3H family protein |