PlantTFDB - Plant Transcription Factor Database @ CBI, PKU

PlantRegMap/PlantTFDB v5.0

Plant Transcription Factor Database

Transcription Factor Information

Basic Information | Signature Domain | Sequence |

Basic Information? help Back to Top

TF ID

Pd.00g394880.m01

Organism

Prunus domestica

Taxonomic ID

3758

Taxonomic Lineage

cellular organisms; Eukaryota; Viridiplantae; Streptophyta; Streptophytina; Embryophyta; Tracheophyta; Euphyllophyta; Spermatophyta; Magnoliophyta; Mesangiospermae; eudicotyledons; Gunneridae; Pentapetalae; rosids; fabids; Rosales; Rosaceae; Amygdaloideae; Amygdaleae; Prunus

Family

C3H

Protein Properties

Length: 263aa MW: 29856.8 Da PI: 8.5432

Description

C3H family protein

Gene Model

Gene Model ID	Type	Source	Coding Sequence
Pd.00g394880.m01	genome	GDR	View CDS

Signature Domain? help Back to Top

No.	Domain	Score	E-value	Start	End	HMM Start	HMM End
1	zf-CCCH	22.4	2.1e-07	72	96	1	26
--S---SGGGGTS--TTTTT-SS-SS CS zf-CCCH 1 yktelCrffartGtCkyGdrCkFaHg 26 +kt+lC++f G C+yG C+FaHg Pd.00g394880.m01 72 FKTRLCNNFKM-GNCHYGQGCCFAHG 96 79*******.***********8 PP
2	zf-CCCH	18.8	2.9e-06	130	150	5	25
--SGGGGTS--TTTTT-SS-S CS zf-CCCH 5 lCrffartGtCkyGdrCkFaH 25 Cr f+ +G C yGd+C++ H Pd.00g394880.m01 130 VCRLFFNGGKCTYGDKCRYPH 150 6*****************977 PP

Sequence ? help Back to Top
Protein Sequence Length: 263 aa Download sequence
MSDSGPTCQF FAPYLESGDN RHQLKPEFPN ADKDFKDHSD IESHPSKKPK TSEVVLISTI 60 PMAQNKMLPR NFKTRLCNNF KMGNCHYGQG CCFAHGISDL RKTWLNWQGL ETEEDFKART 120 CDHRRTSNDV CRLFFNGGKC TYGDKCRYPH HVTPENIREK SAISILTSGA HIGGSGQFYS 180 KRSLELMKLC GYMAVESRSV QNSRTSSTSM SKLRMGVGAT YHKQVPGMEC NFKWNELEKM 240 SRIYADWIED IPLVHGSSSK AEC

Best hit in Arabidopsis thaliana ? help Back to Top
Hit ID	E-value	Description
AT2G35430.1	9e-12	C3H family protein