PlantTFDB
PlantRegMap/PlantTFDB v5.0
Plant Transcription Factor Database
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(e.g., LFY)
Transcription Factor Information
Basic Information | Signature Domain | Sequence | 
Basic Information? help Back to Top
TF ID Pd.00g392120.m01
Organism
Prunus domestica
Taxonomic ID
Taxonomic Lineage
cellular organisms; Eukaryota; Viridiplantae; Streptophyta; Streptophytina; Embryophyta; Tracheophyta; Euphyllophyta; Spermatophyta; Magnoliophyta; Mesangiospermae; eudicotyledons; Gunneridae; Pentapetalae; rosids; fabids; Rosales; Rosaceae; Amygdaloideae; Amygdaleae; Prunus
Family M-type_MADS
Protein Properties Length: 260aa    MW: 28827.3 Da    PI: 6.1704
Description M-type_MADS family protein
Gene Model
Gene Model ID Type Source Coding Sequence
Pd.00g392120.m01genomeGDRView CDS
Signature Domain? help Back to Top
Signature Domain
No. Domain Score E-value Start End HMM Start HMM End
1SRF-TF88.63.2e-28958150
                      S---SHHHHHHHHHHHHHHHHHHHHHHHHHHT-EEEEEEE-TTSEEEEEE CS
            SRF-TF  1 krienksnrqvtfskRrngilKKAeELSvLCdaevaviifsstgklyeys 50
                      krien++nrqvtfskRrng++KKA+ELS+LCd+++a+i+fs++g+l  +s
  Pd.00g392120.m01  9 KRIENTTNRQVTFSKRRNGLIKKAYELSILCDIDIALIMFSPSGRLSHFS 58
                      79********************************************9997 PP
Sequence ? help Back to Top
Protein Sequence    Length: 260 aa     Download sequence    
MGRVKLEIKR IENTTNRQVT FSKRRNGLIK KAYELSILCD IDIALIMFSP SGRLSHFSGK  60
RRIYEPDPLK ITSMAEFESC EKSLMDTLTR VMQRKEYLLS NHLSSYDSSG MPQVLPGSFE  120
NEVAGWLSSG GHNQAQIYDA SAPLDHQLRN LSSTLYDPFS QGTSSNADPS SMGECHVSVT  180
NASDGELPPW PQAYTNSSGH PSTLMPSGLL PQFQHTMVGS NMPEIMPHEQ VEIPVGSPNV  240
QAYNEGAEYH ENKVPQLNGH
Best hit in Arabidopsis thaliana ? help Back to Top
Hit ID E-value Description
AT1G22130.16e-45MIKC_MADS family protein