PlantRegMap/PlantTFDB v5.0
Plant Transcription
Factor Database
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Transcription Factor Information
Basic Information? help Back to Top | |||||||||
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TF ID | Pd.00g379520.m01 | ||||||||
Organism | |||||||||
Taxonomic ID | |||||||||
Taxonomic Lineage |
cellular organisms; Eukaryota; Viridiplantae; Streptophyta; Streptophytina; Embryophyta; Tracheophyta; Euphyllophyta; Spermatophyta; Magnoliophyta; Mesangiospermae; eudicotyledons; Gunneridae; Pentapetalae; rosids; fabids; Rosales; Rosaceae; Amygdaloideae; Amygdaleae; Prunus
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Family | MYB | ||||||||
Protein Properties | Length: 338aa MW: 37999.7 Da PI: 7.8566 | ||||||||
Description | MYB family protein | ||||||||
Gene Model |
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Signature Domain? help Back to Top | |||||||
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No. | Domain | Score | E-value | Start | End | HMM Start | HMM End |
1 | Myb_DNA-binding | 50.1 | 6.4e-16 | 13 | 60 | 1 | 48 |
TSSS-HHHHHHHHHHHHHTTTT-HHHHHHHHTTTS-HHHHHHHHHHHT CS Myb_DNA-binding 1 rgrWTteEdellvdavkqlGggtWktIartmgkgRtlkqcksrwqkyl 48 rg W++eEde+l + ++ G g+W++++++ g+ R++k+c++rw +yl Pd.00g379520.m01 13 RGLWSPEEDEKLMKHITTRGHGSWSSVPKHAGLQRCGKSCRLRWINYL 60 788*******************************************97 PP | |||||||
2 | Myb_DNA-binding | 57.5 | 3e-18 | 66 | 109 | 1 | 46 |
TSSS-HHHHHHHHHHHHHTTTT-HHHHHHHHTTTS-HHHHHHHHHH CS Myb_DNA-binding 1 rgrWTteEdellvdavkqlGggtWktIartmgkgRtlkqcksrwqk 46 rg++T+eE+++++d+++ lG++ W+ Ia++++ gRt++++k++w++ Pd.00g379520.m01 66 RGSFTPEEEQIIIDVHRILGNR-WAQIAKHLP-GRTDNEVKNFWNS 109 89********************.*********.***********96 PP |
Sequence ? help Back to Top |
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Protein Sequence Length: 338 aa Download sequence |
MGHRCCGKQK VKRGLWSPEE DEKLMKHITT RGHGSWSSVP KHAGLQRCGK SCRLRWINYL 60 RPELKRGSFT PEEEQIIIDV HRILGNRWAQ IAKHLPGRTD NEVKNFWNSC IKKKLMSQGL 120 DPKTHNLISS HQRSSNKIGS SRSQPHDQQK PISVNFTTVN SQKKNCSAEL NSSSSPIVTL 180 YNAQQLPMVQ TMATPPTYQY HDDQNPNAAW TSVKDPTFHE PSAESTLNIS SSSSSSSMNL 240 SVFGLLDNSN CLYAAGAQPF EAPRKLLEGE QSKGSEEVLQ QEKEKLLEME MFKAIDQDMD 300 ASLMESSSFD FSFLESTLMS TGVTSHDLNS VADFAWNY |
Best hit in Arabidopsis thaliana ? help Back to Top | ||||||
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Hit ID | E-value | Description | ||||
AT3G12720.1 | 2e-87 | MYB family protein |