PlantRegMap/PlantTFDB v5.0
Plant Transcription
Factor Database
|
Home TFext BLAST Prediction Download Help About Links PlantRegMap |
Transcription Factor Information
Basic Information? help Back to Top | |||||||||
---|---|---|---|---|---|---|---|---|---|
TF ID | Pd.00g379180.m01 | ||||||||
Organism | |||||||||
Taxonomic ID | |||||||||
Taxonomic Lineage |
cellular organisms; Eukaryota; Viridiplantae; Streptophyta; Streptophytina; Embryophyta; Tracheophyta; Euphyllophyta; Spermatophyta; Magnoliophyta; Mesangiospermae; eudicotyledons; Gunneridae; Pentapetalae; rosids; fabids; Rosales; Rosaceae; Amygdaloideae; Amygdaleae; Prunus
|
||||||||
Family | C3H | ||||||||
Protein Properties | Length: 501aa MW: 54421.6 Da PI: 7.7083 | ||||||||
Description | C3H family protein | ||||||||
Gene Model |
|
Signature Domain? help Back to Top | |||||||
---|---|---|---|---|---|---|---|
No. | Domain | Score | E-value | Start | End | HMM Start | HMM End |
1 | zf-CCCH | 30 | 8.7e-10 | 133 | 157 | 2 | 26 |
-S---SGGGGTS--TTTTT-SS-SS CS zf-CCCH 2 ktelCrffartGtCkyGdrCkFaHg 26 +++ C +++ t tCk+G+ CkF H+ Pd.00g379180.m01 133 GEKDCAHYMLTRTCKFGELCKFDHP 157 7889********************8 PP | |||||||
2 | zf-CCCH | 28.3 | 3e-09 | 184 | 210 | 1 | 27 |
--S---SGGGGTS--TTTTT-SS-SSS CS zf-CCCH 1 yktelCrffartGtCkyGdrCkFaHgp 27 ++++ C++f +t Ck+G rCkF+H++ Pd.00g379180.m01 184 PGEPDCPYFIKTQRCKFGMRCKFNHPK 210 5789*********************96 PP | |||||||
3 | zf-CCCH | 37.6 | 3.6e-12 | 233 | 257 | 3 | 27 |
S---SGGGGTS--TTTTT-SS-SSS CS zf-CCCH 3 telCrffartGtCkyGdrCkFaHgp 27 +++C f+++tG+Ck+G++CkF+H++ Pd.00g379180.m01 233 EPPCAFYLKTGQCKFGATCKFHHPK 257 79*********************96 PP | |||||||
4 | zf-CCCH | 38.4 | 2e-12 | 307 | 332 | 1 | 26 |
--S---SGGGGTS--TTTTT-SS-SS CS zf-CCCH 1 yktelCrffartGtCkyGdrCkFaHg 26 ++++ C+f+++tG CkyG++C+++H+ Pd.00g379180.m01 307 PGEPDCPFYLKTGSCKYGATCRYNHP 332 5789*********************9 PP | |||||||
5 | zf-CCCH | 36.9 | 6.2e-12 | 394 | 416 | 4 | 26 |
---SGGGGTS--TTTTT-SS-SS CS zf-CCCH 4 elCrffartGtCkyGdrCkFaHg 26 +C+++++tG+C++G++Ck++H+ Pd.00g379180.m01 394 IECDYYMKTGECRFGEQCKYHHP 416 68********************8 PP | |||||||
6 | zf-CCCH | 40.2 | 5.5e-13 | 447 | 472 | 2 | 27 |
-S---SGGGGTS--TTTTT-SS-SSS CS zf-CCCH 2 ktelCrffartGtCkyGdrCkFaHgp 27 + ++C ++++tGtCkyG++CkF H+p Pd.00g379180.m01 447 GVAICVYYLKTGTCKYGATCKFDHPP 472 5789********************96 PP |
Sequence ? help Back to Top |
---|
Protein Sequence Length: 501 aa Download sequence |
MSSHLYGYGA AQSAAAAAAA TAGLSSVYTS RALTDPTLRY LSGSDPFASA TDHHSRSSSM 60 YLATSHLMSQ SSWPAPDVEP GVPGVKRPSE ALYHQSFMGA YNTIGQEAWY SALAKRPRYE 120 SASNLPIYPQ RPGEKDCAHY MLTRTCKFGE LCKFDHPIWV PEGGIPDWKE VPLVAPSESL 180 PERPGEPDCP YFIKTQRCKF GMRCKFNHPK EKLAAAVASE NADVFALPER PSEPPCAFYL 240 KTGQCKFGAT CKFHHPKDIQ IPSAEQENKI GETGTIIQAE GTGFAVKLPV SFSPALLYNS 300 KELPVRPGEP DCPFYLKTGS CKYGATCRYN HPDRYDFCAA INPPIGAISH SIVAPPAAGL 360 NIGVINPAAS IYQTLAQPTV GGGQTVYPQR FGQIECDYYM KTGECRFGEQ CKYHHPIDRS 420 AVALSTTKPV QQQNVKLTLA GLPRREGVAI CVYYLKTGTC KYGATCKFDH PPPGEVMGMA 480 ASQGASGGEA KADEFTQEQQ Q |
Best hit in Arabidopsis thaliana ? help Back to Top | ||||||
---|---|---|---|---|---|---|
Hit ID | E-value | Description | ||||
AT3G12680.1 | 0.0 | C3H family protein |