PlantTFDB - Plant Transcription Factor Database @ CBI, PKU

PlantRegMap/PlantTFDB v5.0

Plant Transcription Factor Database

Transcription Factor Information

Basic Information | Signature Domain | Sequence |

Basic Information? help Back to Top

TF ID

Pd.00g354290.m01

Organism

Prunus domestica

Taxonomic ID

3758

Taxonomic Lineage

cellular organisms; Eukaryota; Viridiplantae; Streptophyta; Streptophytina; Embryophyta; Tracheophyta; Euphyllophyta; Spermatophyta; Magnoliophyta; Mesangiospermae; eudicotyledons; Gunneridae; Pentapetalae; rosids; fabids; Rosales; Rosaceae; Amygdaloideae; Amygdaleae; Prunus

Family

NF-X1

Protein Properties

Length: 1106aa MW: 120066 Da PI: 8.047

Description

NF-X1 family protein

Gene Model

Gene Model ID	Type	Source	Coding Sequence
Pd.00g354290.m01	genome	GDR	View CDS

Signature Domain? help Back to Top

No.	Domain	Score	E-value	Start	End	HMM Start	HMM End
1	zf-NF-X1	18.2	5.3e-06	296	312	3	19
zf-NF-X1 3 kHkCqklCHeGpCppCp 19 +H+C ++CH GpC+pC+ Pd.00g354290.m01 296 RHRCDRTCHVGPCDPCQ 312 8***************6 PP
2	zf-NF-X1	19.9	1.6e-06	358	375	1	18
zf-NF-X1 1 CGkHkCqklCHeGpCppC 18 CG+H C++ CH+GpC++C Pd.00g354290.m01 358 CGNHACGEVCHPGPCGEC 375 ****************** PP
3	zf-NF-X1	18.8	3.5e-06	410	433	1	18
zf-NF-X1 1 CG......kHkCqklCHeGpCppC 18 CG +H+Cq+ CH+G+CppC Pd.00g354290.m01 410 CGkslpceMHQCQEVCHTGDCPPC 433 777777789*************** PP
4	zf-NF-X1	17.3	1e-05	512	529	1	18
zf-NF-X1 1 CGkHkCqklCHeGpCppC 18 CG+H+C++lCH G CppC Pd.00g354290.m01 512 CGQHSCESLCHSGHCPPC 529 ****************** PP

Sequence ? help Back to Top
Protein Sequence Length: 1106 aa Download sequence
MSSQVPNERR DRFRFPAQPP QPAQSARREW VPRGSNPTTA AVNPPPSFNS NIPNGNVGQP 60 NYSSAPSESR QQHRGNNASR GHMGRPMNHG RERGRSENQE EVRLKDSNLP QLVQEIQDKL 120 TKGTVECMIC YDMVRRSAPV WSCSSCYSIF HLNCIKKWAR APTSIDMSAG KNQGFNWRCP 180 GCQYVQLTSS KEIRYVCFCG KRTDPPSDLY LTPHSCGEPC GKQLERDVPG RGVSEDDLCP 240 HVCVLQCHPG PCPPCKAFAP PRLCPCGKKV ITTRCSDRTS VLTCGQHCNK LLDCLRHRCD 300 RTCHVGPCDP CQVLVDASCF CKKKVEVVLC GDMTVKGEVK AEDGVFSCSS TCGKKLTCGN 360 HACGEVCHPG PCGECNLMPT KIKTCHCGKT SLQGERQSCL DPVPTCPQTC GKSLPCEMHQ 420 CQEVCHTGDC PPCLVKVSQK CRCGSTSRTV ECFKTTMEIE KFTCDKPCGR KKNCGRHRCS 480 ERCCPLSNSN NVLFGDWDPH FCSMPCGKKL RCGQHSCESL CHSGHCPPCL DTIFTDLTCA 540 CGRTSIPPPL PCGTPPPSCQ LPCSVPQPCG HSSSHSCHFG ECPPCSVPVA KECIGGHVVL 600 RNIPCGSRDI KCNKLCGKTR QCGMHACGRT CHPPPCDTSS SVEPGTKTSC GQTCGAPRRD 660 CRHTCTALCH PYAPCPDNRC DFPVTITCSC GRITANVPCD SGGSNASFKA DTVYEASIIQ 720 RLPAPLQPIE STTKKIPLGQ RKFMCDDECA KLERKRVLAD AFDIASPNLD ALHFGESSAV 780 SELLSDLFRR DAKWVLSVEE RCKYLVLGKS RGPTSGLRVH VFCPMLKEKR DVVRMIAERW 840 KLAVQSAGWE PKRFIVVHVT PKSKTPARVI GVKGTTTVNA PQPPAFDNLV DMDPRLVVSF 900 PDLPRDADIS ALVLRFGGEC ELVWLNDKNA LAVFNDPARA ATAMRRLDNG TLYHGAINVL 960 SNGSASVASS GSNAWVGLGT AKEGGVSTAL RGNPWKKAVI REPGWREDSW GDEEWAGGSA 1020 DVQASVWKKE APITASLNRW SVLDSDVALG SSSVSPSIED SGKQSLGGLN PALESNASGS 1080 TSAGQRHGGN IADTSEVVDD WEKAYE

Sequence ? help Back to Top

Protein Sequence Length: 1106 aa Download sequence

MSSQVPNERR DRFRFPAQPP QPAQSARREW VPRGSNPTTA AVNPPPSFNS NIPNGNVGQP  60
NYSSAPSESR QQHRGNNASR GHMGRPMNHG RERGRSENQE EVRLKDSNLP QLVQEIQDKL  120
TKGTVECMIC YDMVRRSAPV WSCSSCYSIF HLNCIKKWAR APTSIDMSAG KNQGFNWRCP  180
GCQYVQLTSS KEIRYVCFCG KRTDPPSDLY LTPHSCGEPC GKQLERDVPG RGVSEDDLCP  240
HVCVLQCHPG PCPPCKAFAP PRLCPCGKKV ITTRCSDRTS VLTCGQHCNK LLDCLRHRCD  300
RTCHVGPCDP CQVLVDASCF CKKKVEVVLC GDMTVKGEVK AEDGVFSCSS TCGKKLTCGN  360
HACGEVCHPG PCGECNLMPT KIKTCHCGKT SLQGERQSCL DPVPTCPQTC GKSLPCEMHQ  420
CQEVCHTGDC PPCLVKVSQK CRCGSTSRTV ECFKTTMEIE KFTCDKPCGR KKNCGRHRCS  480
ERCCPLSNSN NVLFGDWDPH FCSMPCGKKL RCGQHSCESL CHSGHCPPCL DTIFTDLTCA  540
CGRTSIPPPL PCGTPPPSCQ LPCSVPQPCG HSSSHSCHFG ECPPCSVPVA KECIGGHVVL  600
RNIPCGSRDI KCNKLCGKTR QCGMHACGRT CHPPPCDTSS SVEPGTKTSC GQTCGAPRRD  660
CRHTCTALCH PYAPCPDNRC DFPVTITCSC GRITANVPCD SGGSNASFKA DTVYEASIIQ  720
RLPAPLQPIE STTKKIPLGQ RKFMCDDECA KLERKRVLAD AFDIASPNLD ALHFGESSAV  780
SELLSDLFRR DAKWVLSVEE RCKYLVLGKS RGPTSGLRVH VFCPMLKEKR DVVRMIAERW  840
KLAVQSAGWE PKRFIVVHVT PKSKTPARVI GVKGTTTVNA PQPPAFDNLV DMDPRLVVSF  900
PDLPRDADIS ALVLRFGGEC ELVWLNDKNA LAVFNDPARA ATAMRRLDNG TLYHGAINVL  960
SNGSASVASS GSNAWVGLGT AKEGGVSTAL RGNPWKKAVI REPGWREDSW GDEEWAGGSA  1020
DVQASVWKKE APITASLNRW SVLDSDVALG SSSVSPSIED SGKQSLGGLN PALESNASGS  1080
TSAGQRHGGN IADTSEVVDD WEKAYE

Best hit in Arabidopsis thaliana ? help Back to Top
Hit ID	E-value	Description
AT1G10170.1	0.0	NF-X1 family protein