PlantRegMap/PlantTFDB v5.0
Plant Transcription
Factor Database
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Home TFext BLAST Prediction Download Help About Links PlantRegMap |
Transcription Factor Information
Basic Information? help Back to Top | |||||||||
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TF ID | Pd.00g353240.m01 | ||||||||
Organism | |||||||||
Taxonomic ID | |||||||||
Taxonomic Lineage |
cellular organisms; Eukaryota; Viridiplantae; Streptophyta; Streptophytina; Embryophyta; Tracheophyta; Euphyllophyta; Spermatophyta; Magnoliophyta; Mesangiospermae; eudicotyledons; Gunneridae; Pentapetalae; rosids; fabids; Rosales; Rosaceae; Amygdaloideae; Amygdaleae; Prunus
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Family | NAC | ||||||||
Protein Properties | Length: 244aa MW: 27730.8 Da PI: 9.0231 | ||||||||
Description | NAC family protein | ||||||||
Gene Model |
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Signature Domain? help Back to Top | |||||||
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No. | Domain | Score | E-value | Start | End | HMM Start | HMM End |
1 | NAM | 36.6 | 1.3e-11 | 9 | 110 | 1 | 94 |
NAM 1 lppGfrFhPtdeelvveyLkkkvegkk........leleevikevdiykveP.w.dLpkkvkaeekewyfFskrdkkyatgkrknratksgy. 82 lp+G+rF+P+ l+ +yL ++v++ l+ +++ e+d+y e w +L +++e+++yfF++ +kk+ +g+r +r+ g Pd.00g353240.m01 9 LPVGCRFEPSKTKLLAHYLYNRVAHYLynkvnglpLSS-NTVIECDLYGKEEtWrKLF--DETGETSLYFFTELKKKTMRGSRVERTSLGGCv 98 799*************9999998887754555532333.3588999997754141443..34578899******************8776655 PP NAM 83 .Wkatgkdkevls 94 Wk++ dk+++ Pd.00g353240.m01 99 tWKNQS-DKAIYG 110 5*9874.577765 PP |
Sequence ? help Back to Top |
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Protein Sequence Length: 244 aa Download sequence |
METTRGLGLP VGCRFEPSKT KLLAHYLYNR VAHYLYNKVN GLPLSSNTVI ECDLYGKEET 60 WRKLFDETGE TSLYFFTELK KKTMRGSRVE RTSLGGCVTW KNQSDKAIYG NDGPPNKTLI 120 GSGVLVDINV SYLNSAYSSE EVEVKAKALR VGKAVGVASV ELRKKKTCKI IAQGYHTKLD 180 YVLCRIINKQ KLQLTRLRDK QKMYIVNEKN DPNDQEVNIA NDQKDQEMDI ASEVLKLLDA 240 EEMY |
Nucleic Localization Signal ? help Back to Top | |||
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No. | Start | End | Sequence |
1 | 163 | 191 | RKKKTCKIIAQGYHTKLDYVLCRIINKQK |
Best hit in Arabidopsis thaliana ? help Back to Top | ||||||
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Hit ID | E-value | Description | ||||
AT3G03200.1 | 8e-09 | NAC family protein |