PlantTFDB - Plant Transcription Factor Database @ CBI, PKU

PlantRegMap/PlantTFDB v5.0

Plant Transcription Factor Database

Transcription Factor Information

Basic Information | Signature Domain | Sequence |

Basic Information? help Back to Top

TF ID

Pd.00g349940.m03

Organism

Prunus domestica

Taxonomic ID

3758

Taxonomic Lineage

cellular organisms; Eukaryota; Viridiplantae; Streptophyta; Streptophytina; Embryophyta; Tracheophyta; Euphyllophyta; Spermatophyta; Magnoliophyta; Mesangiospermae; eudicotyledons; Gunneridae; Pentapetalae; rosids; fabids; Rosales; Rosaceae; Amygdaloideae; Amygdaleae; Prunus

Family

M-type_MADS

Protein Properties

Length: 443aa MW: 50133.2 Da PI: 8.7931

Description

M-type_MADS family protein

Gene Model

Gene Model ID	Type	Source	Coding Sequence
Pd.00g349940.m03	genome	GDR	View CDS

Signature Domain? help Back to Top

No.	Domain	Score	E-value	Start	End	HMM Start	HMM End
1	SRF-TF	47.7	2e-15	222	263	3	44
--SHHHHHHHHHHHHHHHHHHHHHHHHHHT-EEEEEEE-TTS CS SRF-TF 3 ienksnrqvtfskRrngilKKAeELSvLCdaevaviifsstg 44 i n+ r+ tf kR++ i KKA ELS LC+++v++i++ ++ Pd.00g349940.m03 222 IPNEGTRKMTFRKRKKSIYKKADELSKLCGIDVCLIVYEADQ 263 778999*******************************98776 PP

Sequence ? help Back to Top
Protein Sequence Length: 443 aa Download sequence
MHYKSSTKST GDKGLEFCST IATIAAITGI TGLIGCIVGG SNLFPSFFVS APFVQVLVYL 60 EEVKQLYALE RDILLESLLV MLLGWLTCYY STKWTVRSTG LFDPLSSPPG EKSPCPIGSV 120 NPEKGKESHR KVPLPEEKSH RKKSLCPVGI SPSPSEAKKT KIGGKENNKC LPRQTRPGRG 180 DGGSPVGNRK QIVSLRKPRE DLRTTQVTED MVAPRRRSLE LIPNEGTRKM TFRKRKKSIY 240 KKADELSKLC GIDVCLIVYE ADQKKGRAVQ PETWPLDPTQ FKRSLNKYKD SKDTSTPGLK 300 RNFDMSDFYE DKKDHVDEDD EKFQNLGKKI FEEEYPTKFQ NLGKKISEEE YPTWDDRIDD 360 FSQDELTELI ASLESKIQVA TKKIDSMERY MGFAKKQNQS LVREEINHDE QPYQVPALMS 420 PPSLVHYPML PSAWVSSSES EKS

Sequence ? help Back to Top

Protein Sequence Length: 443 aa Download sequence

MHYKSSTKST GDKGLEFCST IATIAAITGI TGLIGCIVGG SNLFPSFFVS APFVQVLVYL  60
EEVKQLYALE RDILLESLLV MLLGWLTCYY STKWTVRSTG LFDPLSSPPG EKSPCPIGSV  120
NPEKGKESHR KVPLPEEKSH RKKSLCPVGI SPSPSEAKKT KIGGKENNKC LPRQTRPGRG  180
DGGSPVGNRK QIVSLRKPRE DLRTTQVTED MVAPRRRSLE LIPNEGTRKM TFRKRKKSIY  240
KKADELSKLC GIDVCLIVYE ADQKKGRAVQ PETWPLDPTQ FKRSLNKYKD SKDTSTPGLK  300
RNFDMSDFYE DKKDHVDEDD EKFQNLGKKI FEEEYPTKFQ NLGKKISEEE YPTWDDRIDD  360
FSQDELTELI ASLESKIQVA TKKIDSMERY MGFAKKQNQS LVREEINHDE QPYQVPALMS  420
PPSLVHYPML PSAWVSSSES EKS

Nucleic Localization Signal ? help Back to Top

No.	Start	End	Sequence
1	215	237	RRRSLELIPNEGTRKMTFRKRKK
2	233	237	RKRKK

Best hit in Arabidopsis thaliana ? help Back to Top
Hit ID	E-value	Description
AT5G55690.1	6e-19	M-type_MADS family protein