PlantTFDB - Plant Transcription Factor Database @ CBI, PKU

PlantRegMap/PlantTFDB v5.0

Plant Transcription Factor Database

Transcription Factor Information

Basic Information | Signature Domain | Sequence |

Basic Information? help Back to Top

TF ID

Pd.00g349940.m02

Organism

Prunus domestica

Taxonomic ID

3758

Taxonomic Lineage

cellular organisms; Eukaryota; Viridiplantae; Streptophyta; Streptophytina; Embryophyta; Tracheophyta; Euphyllophyta; Spermatophyta; Magnoliophyta; Mesangiospermae; eudicotyledons; Gunneridae; Pentapetalae; rosids; fabids; Rosales; Rosaceae; Amygdaloideae; Amygdaleae; Prunus

Family

M-type_MADS

Protein Properties

Length: 434aa MW: 49089.1 Da PI: 8.9287

Description

M-type_MADS family protein

Gene Model

Gene Model ID	Type	Source	Coding Sequence
Pd.00g349940.m02	genome	GDR	View CDS

Signature Domain? help Back to Top

No.	Domain	Score	E-value	Start	End	HMM Start	HMM End
1	SRF-TF	47.8	1.9e-15	213	254	3	44
--SHHHHHHHHHHHHHHHHHHHHHHHHHHT-EEEEEEE-TTS CS SRF-TF 3 ienksnrqvtfskRrngilKKAeELSvLCdaevaviifsstg 44 i n+ r+ tf kR++ i KKA ELS LC+++v++i++ ++ Pd.00g349940.m02 213 IPNEGTRKMTFRKRKKSIYKKADELSKLCGIDVCLIVYEADQ 254 778999*******************************98776 PP

Sequence ? help Back to Top
Protein Sequence Length: 434 aa Download sequence
MHYKSSTKST GDKGLEFCST IATIAAITGI TGLIGCIVGG SNLFPSFFVS APFVQVLVYL 60 EEVKQLYALE RDILLESLLV MLLGWLTCYY STKWTVRSTG LFDPLSSPPG EKSPCPIGSV 120 NPEKGKESHR KVPLPEEKSH RKKSLCPVGI SPSPSEAKKT KIGGKENNKC LPRQTRPGRG 180 DGGSPVGNRK QIVSLRKPRE DMVAPRRRSL ELIPNEGTRK MTFRKRKKSI YKKADELSKL 240 CGIDVCLIVY EADQKKGRAV QPETWPLDPT QFKRSLNKYK DSKDTSTPGL KRNFDMSDFY 300 EDKKDHVDED DEKFQNLGKK IFEEEYPTKF QNLGKKISEE EYPTWDDRID DFSQDELTEL 360 IASLESKIQV ATKKIDSMER YMGFAKKQNQ SLVREEINHD EQPYQVPALM SPPSLVHYPM 420 LPSAWVSSSE SEKS

Sequence ? help Back to Top

Protein Sequence Length: 434 aa Download sequence

MHYKSSTKST GDKGLEFCST IATIAAITGI TGLIGCIVGG SNLFPSFFVS APFVQVLVYL  60
EEVKQLYALE RDILLESLLV MLLGWLTCYY STKWTVRSTG LFDPLSSPPG EKSPCPIGSV  120
NPEKGKESHR KVPLPEEKSH RKKSLCPVGI SPSPSEAKKT KIGGKENNKC LPRQTRPGRG  180
DGGSPVGNRK QIVSLRKPRE DMVAPRRRSL ELIPNEGTRK MTFRKRKKSI YKKADELSKL  240
CGIDVCLIVY EADQKKGRAV QPETWPLDPT QFKRSLNKYK DSKDTSTPGL KRNFDMSDFY  300
EDKKDHVDED DEKFQNLGKK IFEEEYPTKF QNLGKKISEE EYPTWDDRID DFSQDELTEL  360
IASLESKIQV ATKKIDSMER YMGFAKKQNQ SLVREEINHD EQPYQVPALM SPPSLVHYPM  420
LPSAWVSSSE SEKS

Nucleic Localization Signal ? help Back to Top

No.	Start	End	Sequence
1	206	228	RRRSLELIPNEGTRKMTFRKRKK
2	224	228	RKRKK

Best hit in Arabidopsis thaliana ? help Back to Top
Hit ID	E-value	Description
AT5G55690.1	5e-19	M-type_MADS family protein