PlantRegMap/PlantTFDB v5.0
Plant Transcription
Factor Database
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Transcription Factor Information
Basic Information? help Back to Top | |||||||||
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TF ID | Pd.00g342950.m01 | ||||||||
Organism | |||||||||
Taxonomic ID | |||||||||
Taxonomic Lineage |
cellular organisms; Eukaryota; Viridiplantae; Streptophyta; Streptophytina; Embryophyta; Tracheophyta; Euphyllophyta; Spermatophyta; Magnoliophyta; Mesangiospermae; eudicotyledons; Gunneridae; Pentapetalae; rosids; fabids; Rosales; Rosaceae; Amygdaloideae; Amygdaleae; Prunus
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Family | C3H | ||||||||
Protein Properties | Length: 479aa MW: 50418.2 Da PI: 8.3535 | ||||||||
Description | C3H family protein | ||||||||
Gene Model |
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Signature Domain? help Back to Top | |||||||
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No. | Domain | Score | E-value | Start | End | HMM Start | HMM End |
1 | zf-CCCH | 35.1 | 2.3e-11 | 49 | 73 | 3 | 27 |
S---SGGGGTS--TTTTT-SS-SSS CS zf-CCCH 3 telCrffartGtCkyGdrCkFaHgp 27 + C++++rtG+C yG+rC+++H++ Pd.00g342950.m01 49 ETDCSYYLRTGICGYGSRCRYNHPR 73 568********************96 PP | |||||||
2 | zf-CCCH | 39.5 | 9.4e-13 | 95 | 119 | 3 | 27 |
S---SGGGGTS--TTTTT-SS-SSS CS zf-CCCH 3 telCrffartGtCkyGdrCkFaHgp 27 ++ C++++rtGtCk+G++Ck++H++ Pd.00g342950.m01 95 QPVCQYYMRTGTCKFGASCKYHHPK 119 689********************96 PP | |||||||
3 | zf-CCCH | 36.3 | 9.7e-12 | 140 | 165 | 2 | 27 |
-S---SGGGGTS--TTTTT-SS-SSS CS zf-CCCH 2 ktelCrffartGtCkyGdrCkFaHgp 27 ++++C+++ +tG+Ck+G++CkF+H++ Pd.00g342950.m01 140 GERECSYYVKTGQCKFGATCKFHHPQ 165 789*********************97 PP | |||||||
4 | zf-CCCH | 38.9 | 1.4e-12 | 302 | 328 | 1 | 27 |
--S---SGGGGTS--TTTTT-SS-SSS CS zf-CCCH 1 yktelCrffartGtCkyGdrCkFaHgp 27 +++++C++++rtG Ck+G++C+++H+p Pd.00g342950.m01 302 PGQPECQYYMRTGDCKFGSSCRYHHPP 328 5789*********************97 PP | |||||||
5 | zf-CCCH | 34.4 | 3.6e-11 | 350 | 374 | 3 | 27 |
S---SGGGGTS--TTTTT-SS-SSS CS zf-CCCH 3 telCrffartGtCkyGdrCkFaHgp 27 +lC ++a+ G Ck+G+ CkF H++ Pd.00g342950.m01 350 APLCTHYAQRGVCKFGPACKFDHPM 374 68*********************95 PP |
Sequence ? help Back to Top |
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Protein Sequence Length: 479 aa Download sequence |
MERYGRTTEG SQSDPSPEWT VPGPETGLEE SIWQLGLGPG ESYPERPNET DCSYYLRTGI 60 CGYGSRCRYN HPRDRSAVTG AARPGGLEYP ERAGQPVCQY YMRTGTCKFG ASCKYHHPKQ 120 GGSSSSPVSL NYYGYPLRQG ERECSYYVKT GQCKFGATCK FHHPQPAGIP LPVPSPAPQV 180 SPVPAAPLYQ TVQSPSVSSQ QYGVVFARPP LLPGSYVQSP YGQVLLSPGT IPFPGWSPYQ 240 APASALPSPS TQPGVGSGTV YGMSQLSPSA AAYTGMYQPI PLPSSLGLPT TSQKEHLFPE 300 RPGQPECQYY MRTGDCKFGS SCRYHHPPEV VGPKTTVALS PSGLPSRPGA PLCTHYAQRG 360 VCKFGPACKF DHPMGTLSYS PSASSLADMP VAPYPVGSSI GTLAPSSSSS STELRPELNS 420 GSGKDLVSAR MSSSLSTSSG SVGSTVSKGG ITHLGIQQSA QGSGPSTSSG SSTESHSPS |
Best hit in Arabidopsis thaliana ? help Back to Top | ||||||
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Hit ID | E-value | Description | ||||
AT2G47850.1 | 1e-150 | C3H family protein |