PlantTFDB
PlantRegMap/PlantTFDB v5.0
Plant Transcription Factor Database
Home  TFext  BLAST  Prediction  Download  Help  About  Links  PlantRegMap
(e.g., LFY)
Transcription Factor Information
Basic Information | Signature Domain | Sequence | 
Basic Information? help Back to Top
TF ID Pd.00g341120.m01
Organism
Prunus domestica
Taxonomic ID
Taxonomic Lineage
cellular organisms; Eukaryota; Viridiplantae; Streptophyta; Streptophytina; Embryophyta; Tracheophyta; Euphyllophyta; Spermatophyta; Magnoliophyta; Mesangiospermae; eudicotyledons; Gunneridae; Pentapetalae; rosids; fabids; Rosales; Rosaceae; Amygdaloideae; Amygdaleae; Prunus
Family GRAS
Protein Properties Length: 441aa    MW: 49122.8 Da    PI: 6.6034
Description GRAS family protein
Gene Model
Gene Model ID Type Source Coding Sequence
Pd.00g341120.m01genomeGDRView CDS
Signature Domain? help Back to Top
Signature Domain
No. Domain Score E-value Start End HMM Start HMM End
1GRAS264.82.9e-81554281374
              GRAS   1 lvelLlecAeavssgdlelaqalLarlselaspdgdpmqRlaayfteALaarlar.svselykalppsetseknsseelaalkl......fse 86 
                       l +lLl++Ae v++++  +a++l +  + l+s+ g+++qR++ yft+AL+++  r ++ + ++  ++++   ++  +e++a ++      f e
  Pd.00g341120.m01  55 LAHLLLAFAEKVAKQQYGCARKLQNLCHFLSSSCGNSVQRVVYYFTKALQEKTDReTGRNASEGSESRDVLAMH-FQEAMASSTpalmacFLE 146
                       579*****************9988888888************************93333444333444443333.333333333344444777 PP

              GRAS  87 vsPilkfshltaNqaIleavegeervHiiDfdisqGlQWpaLlqaLasRpegpp.slRiTgvgspesgskeeleetgerLakfAeelgvpfef 178
                       v P+++++ ++  qaI+e+v++++++H iD+ i+ G++ + L+qaLa+R e p   l++T+vg    +s+e++e tg+rLa+fAe+l++pf+f
  Pd.00g341120.m01 147 V-PFYQITEFAGIQAIVESVASAKKIHFIDLAIKTGGHCIVLMQALATRYECPIeLLKVTAVGV---TSREKIEDTGRRLAQFAEALKLPFSF 235
                       5.***********************************************97665499*******...68************************ PP

              GRAS 179 nvlvakrledleleeLrvkpgEalaVnlvlqlhrlldesvsleserdevLklvkslsPkvvvvveqeadhnsesFlerflealeyysalfdsl 271
                       +v ++k+++d++ ++++ + gEa aV + + l ++++++ ++es    ++k++++l+P+++v++e ea+hns++F +rf eal yysa f++l
  Pd.00g341120.m01 236 KVAMVKDIKDVNEDTFESEDGEAAAVYCPILLCSTMRQPNCSES----LIKVLRNLNPRLMVITEIEANHNSPTFTNRFNEALLYYSAYFECL 324
                       **9********************************999999988....********************************************* PP

              GRAS 272 eaklpreseerikvErellgreivnvvacegaerrerhetlekWrerleeaGFkpvplsekaakqaklllrkvk.sdgyrveeesgslvlgWk 363
                       ++ + r s  r+ +E+ +l+ ei+n++a eg+er+ r+ +   Wr  + e+G+ +++ls +   qa+l+ ++++ +   +++ + + l+ gWk
  Pd.00g341120.m01 325 DVCMDRGSAYRMELEETYLSLEIKNIIASEGKERIIRRMKIDAWRTLFAECGMVEAELSLSSLYQADLVAKQFAcGSCCTLDTNGKGLLVGWK 417
                       **************************************************************************9999*************** PP

              GRAS 364 drpLvsvSaWr 374
                       + p++s+S+W+
  Pd.00g341120.m01 418 GTPILSLSVWK 428
                       **********8 PP
Sequence ? help Back to Top
Protein Sequence    Length: 441 aa     Download sequence    
MSCVPGLSTV EVMRIARASF IQFSSRRYAD DCMPARVLGS APLGLSDQET KDVELAHLLL  60
AFAEKVAKQQ YGCARKLQNL CHFLSSSCGN SVQRVVYYFT KALQEKTDRE TGRNASEGSE  120
SRDVLAMHFQ EAMASSTPAL MACFLEVPFY QITEFAGIQA IVESVASAKK IHFIDLAIKT  180
GGHCIVLMQA LATRYECPIE LLKVTAVGVT SREKIEDTGR RLAQFAEALK LPFSFKVAMV  240
KDIKDVNEDT FESEDGEAAA VYCPILLCST MRQPNCSESL IKVLRNLNPR LMVITEIEAN  300
HNSPTFTNRF NEALLYYSAY FECLDVCMDR GSAYRMELEE TYLSLEIKNI IASEGKERII  360
RRMKIDAWRT LFAECGMVEA ELSLSSLYQA DLVAKQFACG SCCTLDTNGK GLLVGWKGTP  420
ILSLSVWKFH AVNAKTAKYL M
Best hit in Arabidopsis thaliana ? help Back to Top
Hit ID E-value Description
AT3G03450.12e-53GRAS family protein