PlantTFDB
PlantRegMap/PlantTFDB v5.0
Plant Transcription Factor Database
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(e.g., LFY)
Transcription Factor Information
Basic Information | Signature Domain | Sequence | 
Basic Information? help Back to Top
TF ID Pd.00g331170.m01
Organism
Prunus domestica
Taxonomic ID
Taxonomic Lineage
cellular organisms; Eukaryota; Viridiplantae; Streptophyta; Streptophytina; Embryophyta; Tracheophyta; Euphyllophyta; Spermatophyta; Magnoliophyta; Mesangiospermae; eudicotyledons; Gunneridae; Pentapetalae; rosids; fabids; Rosales; Rosaceae; Amygdaloideae; Amygdaleae; Prunus
Family CO-like
Protein Properties Length: 309aa    MW: 33773.9 Da    PI: 5.7025
Description CO-like family protein
Gene Model
Gene Model ID Type Source Coding Sequence
Pd.00g331170.m01genomeGDRView CDS
Signature Domain? help Back to Top
Signature Domain
No. Domain Score E-value Start End HMM Start HMM End
1zf-B_box21.64.6e-071858438
          zf-B_box  4 rkCpeHeekelqlfCedCqqllCedClleeHkg......Ht 38
                      r+C+++ +   + +C+ ++ +lC  C  ++H        H+
  Pd.00g331170.m01 18 RVCDTCRSAACTVYCRADSAYLCSGCDATIHVAnrvasrHE 58
                      79******99*********************4445666676 PP
2zf-B_box30.95.8e-1060105342
          zf-B_box   3 erkCpeHeekelqlfCedCqqllCedClleeHkg......Htvvpl 42 
                        ++C+ +e+ ++ + C+ +   lC  C   +H+       H++vp+
  Pd.00g331170.m01  60 VWVCEACEQAPAAFLCKADAASLCTACDADIHSAnqlarrHQRVPI 105
                       689*****************************66899999**9997 PP
3CCT70.25.1e-24240283144
               CCT   1 ReaallRYkeKrktRkFeKkirYesRKavAesRpRvKGrFvkqa 44 
                       Rea++lRY+eK+ktRkFeK+irY+sRKa+Ae+RpR+KGrF+k++
  Pd.00g331170.m01 240 REARVLRYREKKKTRKFEKTIRYASRKAYAETRPRIKGRFAKRT 283
                       9*****************************************97 PP
Sequence ? help Back to Top
Protein Sequence    Length: 309 aa     Download sequence    
MLKEESNGAA ATNNNWARVC DTCRSAACTV YCRADSAYLC SGCDATIHVA NRVASRHERV  60
WVCEACEQAP AAFLCKADAA SLCTACDADI HSANQLARRH QRVPILPISG CLYGPRATDP  120
GGIVVGSAAA ETEDGFLSQE GDETIDEEDE DEAASCVVPV QMQKQSFHQL GLEYESSKAA  180
YSYNGSLSNT VSVSSMDVGV VPDSTMSDIS ISHPRTPKGT IDLFSGPPIQ MPSQLSPLDR  240
EARVLRYREK KKTRKFEKTI RYASRKAYAE TRPRIKGRFA KRTEMEVEVD QMFSTTLMAE  300
NGYGIVPSF
Best hit in Arabidopsis thaliana ? help Back to Top
Hit ID E-value Description
AT3G02380.11e-114CO-like family protein