PlantRegMap/PlantTFDB v5.0
Plant Transcription
Factor Database
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Home TFext BLAST Prediction Download Help About Links PlantRegMap |
Transcription Factor Information
Basic Information? help Back to Top | |||||||||
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TF ID | Pd.00g318540.m01 | ||||||||
Organism | |||||||||
Taxonomic ID | |||||||||
Taxonomic Lineage |
cellular organisms; Eukaryota; Viridiplantae; Streptophyta; Streptophytina; Embryophyta; Tracheophyta; Euphyllophyta; Spermatophyta; Magnoliophyta; Mesangiospermae; eudicotyledons; Gunneridae; Pentapetalae; rosids; fabids; Rosales; Rosaceae; Amygdaloideae; Amygdaleae; Prunus
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Family | MIKC_MADS | ||||||||
Protein Properties | Length: 223aa MW: 25459.2 Da PI: 7.5994 | ||||||||
Description | MIKC_MADS family protein | ||||||||
Gene Model |
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Signature Domain? help Back to Top | |||||||
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No. | Domain | Score | E-value | Start | End | HMM Start | HMM End |
1 | SRF-TF | 30.6 | 4.2e-10 | 43 | 65 | 29 | 51 |
HHHT-EEEEEEE-TTSEEEEEE- CS SRF-TF 29 vLCdaevaviifsstgklyeyss 51 vLCda+v+viifs++g+lye+ss Pd.00g318540.m01 43 VLCDAQVSVIIFSQKGRLYEFSS 65 9********************96 PP | |||||||
2 | K-box | 75.7 | 1.3e-25 | 86 | 177 | 8 | 98 |
K-box 8 s.leeakaeslqqelakLkkeienLqreqRhllGedLesLslkeLqqLeqqLekslkkiRskKnellleqieelqkkekelqeenkaLrkkl 98 + e+ e+l++e++ + k+ienL+ +qR+llG +L+s+s++eLq++ +qLe+s++kiR++K +l+ +q+e+l+ ke+ l een +L++++ Pd.00g318540.m01 86 KiEVEEYVEQLKHESTAMAKKIENLEASQRKLLGHGLDSCSVEELQEITDQLERSVRKIRERKAHLFADQMEQLRAKERLLLEENAKLSQEF 177 3356777899*******************************************************************************997 PP |
Sequence ? help Back to Top |
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Protein Sequence Length: 223 aa Download sequence |
MCCPVLISPS HKVVVLHKFL HFSLLASVRA LQIFEGVSRL GHVLCDAQVS VIIFSQKGRL 60 YEFSSSDMQE TIKRYRKHAK AGQTNKIEVE EYVEQLKHES TAMAKKIENL EASQRKLLGH 120 GLDSCSVEEL QEITDQLERS VRKIRERKAH LFADQMEQLR AKERLLLEEN AKLSQEFGAQ 180 PRLLLHQQQL SVEEKGAVSY WSQSSLSSEV ETELFIGPPV TRC |
Best hit in Arabidopsis thaliana ? help Back to Top | ||||||
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Hit ID | E-value | Description | ||||
AT5G62165.3 | 3e-56 | MIKC_MADS family protein |