PlantTFDB
PlantRegMap/PlantTFDB v5.0
Plant Transcription Factor Database
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(e.g., LFY)
Transcription Factor Information
Basic Information | Signature Domain | Sequence | 
Basic Information? help Back to Top
TF ID Pd.00g313740.m01
Organism
Prunus domestica
Taxonomic ID
Taxonomic Lineage
cellular organisms; Eukaryota; Viridiplantae; Streptophyta; Streptophytina; Embryophyta; Tracheophyta; Euphyllophyta; Spermatophyta; Magnoliophyta; Mesangiospermae; eudicotyledons; Gunneridae; Pentapetalae; rosids; fabids; Rosales; Rosaceae; Amygdaloideae; Amygdaleae; Prunus
Family Trihelix
Protein Properties Length: 606aa    MW: 68644.1 Da    PI: 6.224
Description Trihelix family protein
Gene Model
Gene Model ID Type Source Coding Sequence
Pd.00g313740.m01genomeGDRView CDS
Signature Domain? help Back to Top
Signature Domain
No. Domain Score E-value Start End HMM Start HMM End
1trihelix48.71.9e-1576135266
          trihelix   2 WtkqevlaLiearremeerlrrgklkkplWeevskkmrergferspkqCkekwenlnkrykkike 66 
                       W+++e laL+++r+ m++++ +       We+vs+k++e gf+rs+++Ckek+e+ ++++ +i+ 
  Pd.00g313740.m01  76 WSNDELLALLRIRSTMDNWFPEF-----TWEHVSRKLAELGFKRSAEKCKEKFEEESRYFNNINF 135
                       ********************998.....9*******************************99875 PP
2trihelix97.61.1e-30432521186
          trihelix   1 rWtkqevlaLiearremeerlrrgk.....lkkplWeevskkmrergferspkqCkekwenlnkrykkikegekkrtsessstcpyfdqle 86 
                       rW+++evlaLi++r ++ ++ ++++      k+plWe++s+ m e+g++rs+k+Ckekwen+nk+++k+k+ +kkr s +s+tcpyf+ql 
  Pd.00g313740.m01 432 RWPRDEVLALINLRCSLFNNGSADQdkngvVKAPLWERISQGMLEKGYKRSAKRCKEKWENINKYFRKTKDVNKKR-SLDSRTCPYFHQLS 521
                       8********************9865556669********************************************8.9999********95 PP
Sequence ? help Back to Top
Protein Sequence    Length: 606 aa     Download sequence    
MAQEQTKIAL FHTLGSCLLE QINVTVPAGV QLHRQSATPK NHEEKKESNL VSINNNLEIE  60
RERSSSISQV PISDPWSNDE LLALLRIRST MDNWFPEFTW EHVSRKLAEL GFKRSAEKCK  120
EKFEEESRYF NNINFTKNYR FLSDLEELCH GGDDDQNPDQ AAAGAENKNQ QKVEKPSNNE  180
GDEDNRCQIL DEDSTRNETV VGSKEFDDQD KEKEVVERTK SNVVRKRKRQ RRFEMLKGFC  240
EDIVNRMMAQ QEEMHSKLLE DMVKRSEEKL AREEAWKKQE MDRMNRELEI MAHEQAIAGD  300
RQATIIKFLK KFASSSSSST SSEPSPDHNH RTNSSSLINQ ARNPNHPTCS QEKEPTSSTI  360
IQKSGTSSHT PNNPSTPISL TETLAPQSPS SSTLAPTPTI PKVPIPPENP SSDHLNTQNP  420
TSKDDKQDLG KRWPRDEVLA LINLRCSLFN NGSADQDKNG VVKAPLWERI SQGMLEKGYK  480
RSAKRCKEKW ENINKYFRKT KDVNKKRSLD SRTCPYFHQL STLYNQGILV PPSDHIQGPD  540
HQTSSASPEN QSLASPVVPQ TGLDSSDQGR CSADADDDLS KHNIIGEGEK NNTVQPVPAA  600
AFDFEF
Nucleic Localization Signal ? help Back to Top
NLS
No. Start End Sequence
1226231KRKRQR
Best hit in Arabidopsis thaliana ? help Back to Top
Hit ID E-value Description
AT5G28300.11e-103Trihelix family protein