PlantRegMap/PlantTFDB v5.0
Plant Transcription
Factor Database
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Transcription Factor Information
Basic Information? help Back to Top | |||||||||
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TF ID | Pd.00g313090.m01 | ||||||||
Organism | |||||||||
Taxonomic ID | |||||||||
Taxonomic Lineage |
cellular organisms; Eukaryota; Viridiplantae; Streptophyta; Streptophytina; Embryophyta; Tracheophyta; Euphyllophyta; Spermatophyta; Magnoliophyta; Mesangiospermae; eudicotyledons; Gunneridae; Pentapetalae; rosids; fabids; Rosales; Rosaceae; Amygdaloideae; Amygdaleae; Prunus
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Family | ARF | ||||||||
Protein Properties | Length: 722aa MW: 80323.4 Da PI: 6.5493 | ||||||||
Description | ARF family protein | ||||||||
Gene Model |
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Signature Domain? help Back to Top | |||||||
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No. | Domain | Score | E-value | Start | End | HMM Start | HMM End |
1 | B3 | 69.5 | 4.4e-22 | 171 | 271 | 1 | 98 |
EEEE-..-HHHHTT-EE--HHH.HTT.......---..--SEEEEEETTS-EEEEEE..EEETTEEEE-TTHHHHHHHHT--TT-EEEEEE-S CS B3 1 ffkvltpsdvlksgrlvlpkkfaeeh.......ggkkeesktltledesgrsWevkliyrkksgryvltkGWkeFvkangLkegDfvvFkldg 86 f+k+lt sd++++g +++ +++a+++ +++ ++l+ d++g++W +++i+r++++r++lt+GW+ Fv++++L +gD ++F + Pd.00g313090.m01 171 FCKTLTASDTSTHGGFSVLRRHADDClppldmsQQP--PWQELVAADLHGNEWHFRHIFRGQPRRHLLTTGWSVFVSSKKLVAGDAFIFL--R 259 99****************************964333..4459************************************************..4 PP SSEE..EEEEE- CS B3 87 rsefelvvkvfr 98 +++el+v+v+r Pd.00g313090.m01 260 GENGELRVGVRR 271 49999*****97 PP | |||||||
2 | Auxin_resp | 108.7 | 6.1e-36 | 297 | 379 | 1 | 83 |
Auxin_resp 1 aahaastksvFevvYnPrastseFvvkvekvekalkvkvsvGmRfkmafetedsserrlsGtvvgvsdldpvrWpnSkWrsLk 83 a+ha++t++ F+v+Y+Pr+s+seF v+v+k+++a ++k+svGmRfkm+fe+e+++err+sGt+vgv d + W nS+WrsLk Pd.00g313090.m01 297 ASHAIATGTLFSVFYKPRTSRSEFLVSVNKYLEAHSHKLSVGMRFKMRFEGEEVPERRFSGTIVGVCDNTSPGWANSEWRSLK 379 789******************************************************************************96 PP |
Sequence ? help Back to Top |
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Protein Sequence Length: 722 aa Download sequence |
MGWETQGVRC RDFRFTIHSA GSFLSADQLS GKASGVGEHL FSFAMTFSAP NHPQGSSRIG 60 MSGDALYKEL WHACAGPLVS LPREGERVYY FPQGHMEQLE ASMHQGSEQQ MPSFNLPSKI 120 LCKVVNVQLR AEPETDEVYA QVTLLPEADQ SEITSPDPPL PETPRCTVHS FCKTLTASDT 180 STHGGFSVLR RHADDCLPPL DMSQQPPWQE LVAADLHGNE WHFRHIFRGQ PRRHLLTTGW 240 SVFVSSKKLV AGDAFIFLRG ENGELRVGVR RLMRQPSNMP SSVISSHSMH LGVLATASHA 300 IATGTLFSVF YKPRTSRSEF LVSVNKYLEA HSHKLSVGMR FKMRFEGEEV PERRFSGTIV 360 GVCDNTSPGW ANSEWRSLKV QWDEPSSILR PDRVSPWELE PLVATTPLNS QPALRNKRAR 420 PPVLPSPSPD LSALGEWKSQ VESPSAFSYS DPQRGRDIYP SPKYNSASKA NSLCFTGNNS 480 LAAVSGNSMF WSNRVDGVTE PFSPITNKDS GERRQGTGNG CRLFGIQLLE NSNVEESSPV 540 VMVSGKLGDI RPISSFDAES DQHSEPSNVN RSDLPSGSCD AEKSCLRSPQ ESQSRQIRSC 600 TKVHMQGIAV GRAVDLTRFE RYKDLLKKLE EMFDIEGELC GSTKKWQVVY TDDEDDMMMV 660 GDDPWHEFCS MVRKIFIYTI EEVKRLSPKI KLTLNEEVKP GKPDSEAAVN TEDQSSIVGP 720 AY |
Best hit in Arabidopsis thaliana ? help Back to Top | ||||||
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Hit ID | E-value | Description | ||||
AT1G59750.4 | 0.0 | ARF family protein |