PlantTFDB - Plant Transcription Factor Database @ CBI, PKU

PlantRegMap/PlantTFDB v5.0

Plant Transcription Factor Database

Transcription Factor Information

Basic Information | Signature Domain | Sequence |

Basic Information? help Back to Top

TF ID

Pd.00g300480.m01

Organism

Prunus domestica

Taxonomic ID

3758

Taxonomic Lineage

cellular organisms; Eukaryota; Viridiplantae; Streptophyta; Streptophytina; Embryophyta; Tracheophyta; Euphyllophyta; Spermatophyta; Magnoliophyta; Mesangiospermae; eudicotyledons; Gunneridae; Pentapetalae; rosids; fabids; Rosales; Rosaceae; Amygdaloideae; Amygdaleae; Prunus

Family

C3H

Protein Properties

Length: 1015aa MW: 110053 Da PI: 8.7962

Description

C3H family protein

Gene Model

Gene Model ID	Type	Source	Coding Sequence
Pd.00g300480.m01	genome	GDR	View CDS

Signature Domain? help Back to Top

No.	Domain	Score	E-value	Start	End	HMM Start	HMM End
1	zf-CCCH	36.6	7.7e-12	4	27	2	26
-S---SGGGGTS--TTTTT-SS-SS CS zf-CCCH 2 ktelCrffartGtCkyGdrCkFaHg 26 k+e+C++f+r G C++GdrCkF H+ Pd.00g300480.m01 4 KREPCKYFQR-GSCQFGDRCKFLHV 27 89******.***********6 PP

Sequence ? help Back to Top
Protein Sequence Length: 1015 aa Download sequence
MPVKREPCKY FQRGSCQFGD RCKFLHVIQQ QQKSNIFGFG PQSGSDQQRK SNPYGFGVQN 60 NSQSKGPADF GSKQSQFKPF ENKWSRFSSQ TASAAPSSQK SDKQPQATNH RCTDPDSCRS 120 IIIEDNEHES PLWKLTCYGH WKNFPCDIVG DISYEELRAA AYDDAKHGLN MQSIIERERN 180 LLNTKLIEFD KLCKPQGALL KPNHSSQNPF PSASQNAFLQ AANNSAAPSL SSFSQLGTSL 240 NTGFGPRQVS LLIFTLLWPS APSNNGFAQL NPFANSTQTS SGFGTNNFLS GSAGFGNTGV 300 MRHETNPFST LAVSSQIPSA TTGLPPILSD GPTSASNAVR QSTTEVQFLT NMQREKISGE 360 TSIWLKKIWS PGEIPEEEPP DALVEFQSLE MLRKEGLPPI VRPNIPIIFC NICKGFCIYL 420 MLYTVPVKSA ATSSTSSGEG SLGVVKVDPT LNFENPRLRQ AYIALQAWKA AIFSDPFNFT 480 SSWNGSDVCS YMGVFCAPMS TGAHGRVVAG IDLNHADIAG YLPPELGLLS DLALFHLNSN 540 RFCGVVPSSL RRMKLLHELD LSNNRFVGDF PKVVFSLPSL KYLDLRFNEF EGSVPSQLFD 600 KDLDALFLND NRFQFGIPPN LGNSPVSVLV LANNNLGGCI PGSIGNMAKT LNEIILSNDN 660 LTGCLPPQIG LLTNLTVFDV SFNRLQGPLP STIGKNMKSL EELDVACNRL AGVIPASICQ 720 LPRLHNFTYS FNYFTGEAPA CAANKNNING RKNCIRGKLD QRSARECASP AARPVDCRKL 780 QCSSTTSPGG GGGSGGGSKR RPPPPSAPVG NKPPAQRRPP RVSTPPPPTS ESSPSTRSHP 840 PPPSNPSSSS SSPPLVPNRA PPPSNSNSHS HSPAKPPPLT QRVSPRTHLP PSPPPSRSHH 900 HWTLTPPPPP TQNVSPTTHL RPPPPPLPTH YNSSSSPPPP VLYHASPPDH SKHDLVSPSP 960 PNQHHHSPPE QQHWHQPPPS SHQQFPPPSP LDSTPLPPVI GVSYASPPPP VVPYY

Sequence ? help Back to Top

Protein Sequence Length: 1015 aa Download sequence

MPVKREPCKY FQRGSCQFGD RCKFLHVIQQ QQKSNIFGFG PQSGSDQQRK SNPYGFGVQN  60
NSQSKGPADF GSKQSQFKPF ENKWSRFSSQ TASAAPSSQK SDKQPQATNH RCTDPDSCRS  120
IIIEDNEHES PLWKLTCYGH WKNFPCDIVG DISYEELRAA AYDDAKHGLN MQSIIERERN  180
LLNTKLIEFD KLCKPQGALL KPNHSSQNPF PSASQNAFLQ AANNSAAPSL SSFSQLGTSL  240
NTGFGPRQVS LLIFTLLWPS APSNNGFAQL NPFANSTQTS SGFGTNNFLS GSAGFGNTGV  300
MRHETNPFST LAVSSQIPSA TTGLPPILSD GPTSASNAVR QSTTEVQFLT NMQREKISGE  360
TSIWLKKIWS PGEIPEEEPP DALVEFQSLE MLRKEGLPPI VRPNIPIIFC NICKGFCIYL  420
MLYTVPVKSA ATSSTSSGEG SLGVVKVDPT LNFENPRLRQ AYIALQAWKA AIFSDPFNFT  480
SSWNGSDVCS YMGVFCAPMS TGAHGRVVAG IDLNHADIAG YLPPELGLLS DLALFHLNSN  540
RFCGVVPSSL RRMKLLHELD LSNNRFVGDF PKVVFSLPSL KYLDLRFNEF EGSVPSQLFD  600
KDLDALFLND NRFQFGIPPN LGNSPVSVLV LANNNLGGCI PGSIGNMAKT LNEIILSNDN  660
LTGCLPPQIG LLTNLTVFDV SFNRLQGPLP STIGKNMKSL EELDVACNRL AGVIPASICQ  720
LPRLHNFTYS FNYFTGEAPA CAANKNNING RKNCIRGKLD QRSARECASP AARPVDCRKL  780
QCSSTTSPGG GGGSGGGSKR RPPPPSAPVG NKPPAQRRPP RVSTPPPPTS ESSPSTRSHP  840
PPPSNPSSSS SSPPLVPNRA PPPSNSNSHS HSPAKPPPLT QRVSPRTHLP PSPPPSRSHH  900
HWTLTPPPPP TQNVSPTTHL RPPPPPLPTH YNSSSSPPPP VLYHASPPDH SKHDLVSPSP  960
PNQHHHSPPE QQHWHQPPPS SHQQFPPPSP LDSTPLPPVI GVSYASPPPP VVPYY

Best hit in Arabidopsis thaliana ? help Back to Top
Hit ID	E-value	Description
AT1G75340.2	1e-54	C3H family protein