PlantRegMap/PlantTFDB v5.0
Plant Transcription
Factor Database
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Home TFext BLAST Prediction Download Help About Links PlantRegMap |
Transcription Factor Information
Basic Information? help Back to Top | |||||||||
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TF ID | Pd.00g296740.m01 | ||||||||
Organism | |||||||||
Taxonomic ID | |||||||||
Taxonomic Lineage |
cellular organisms; Eukaryota; Viridiplantae; Streptophyta; Streptophytina; Embryophyta; Tracheophyta; Euphyllophyta; Spermatophyta; Magnoliophyta; Mesangiospermae; eudicotyledons; Gunneridae; Pentapetalae; rosids; fabids; Rosales; Rosaceae; Amygdaloideae; Amygdaleae; Prunus
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Family | LBD | ||||||||
Protein Properties | Length: 130aa MW: 14434.3 Da PI: 7.342 | ||||||||
Description | LBD family protein | ||||||||
Gene Model |
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Signature Domain? help Back to Top | |||||||
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No. | Domain | Score | E-value | Start | End | HMM Start | HMM End |
1 | DUF260 | 65.9 | 9.7e-21 | 62 | 121 | 1 | 60 |
DUF260 1 aCaaCkvlrrkCakdCvlapyfpaeqpkkfanvhklFGasnvlkllkalpeeeredamss 60 aCa+Ck +rr+C + C +apyfpa++ ++f+n+hk+FG+ n++k+++ + +++r++a+++ Pd.00g296740.m01 62 ACASCKQQRRECDETCEMAPYFPASRYSEFQNAHKIFGVINIQKIMAMAAPDQRQAAAEA 121 7*******************************************************9986 PP |
Sequence ? help Back to Top |
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Protein Sequence Length: 130 aa Download sequence |
MDARVFRAVV LTSMLVLAIA QADINPSYTN AIPNGNTLGQ ADDAFDPSNT NHVVPNGHRC 60 IACASCKQQR RECDETCEMA PYFPASRYSE FQNAHKIFGV INIQKIMAMA APDQRQAAAE 120 AFSRRERQEK |
Best hit in Arabidopsis thaliana ? help Back to Top | ||||||
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Hit ID | E-value | Description | ||||
AT1G06280.1 | 1e-15 | LBD family protein |