PlantTFDB
PlantRegMap/PlantTFDB v5.0
Plant Transcription Factor Database
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(e.g., LFY)
Transcription Factor Information
Basic Information | Signature Domain | Sequence | 
Basic Information? help Back to Top
TF ID Pd.00g294840.m01
Organism
Prunus domestica
Taxonomic ID
Taxonomic Lineage
cellular organisms; Eukaryota; Viridiplantae; Streptophyta; Streptophytina; Embryophyta; Tracheophyta; Euphyllophyta; Spermatophyta; Magnoliophyta; Mesangiospermae; eudicotyledons; Gunneridae; Pentapetalae; rosids; fabids; Rosales; Rosaceae; Amygdaloideae; Amygdaleae; Prunus
Family LBD
Protein Properties Length: 333aa    MW: 37339.2 Da    PI: 4.0225
Description LBD family protein
Gene Model
Gene Model ID Type Source Coding Sequence
Pd.00g294840.m01genomeGDRView CDS
Signature Domain? help Back to Top
Signature Domain
No. Domain Score E-value Start End HMM Start HMM End
1DUF26035.52.8e-1126043101
            DUF260  43 lkllkalpeeeredamsslvyeAearardPvyGavgvilklqqqleqlkaelallkeel 101
                       +++l+ lp +er  a  ++++eA+ara dP+yGa++ il+lq+q+ + +a+l++++e+l
  Pd.00g294840.m01   2 SRILSMLPMSERAVASWTMTFEAHARAVDPIYGATSYILDLQEQVLNIQAQLDEAHEQL 60 
                       578899999*********************************************99985 PP
2DUF26054.33.9e-1714922327101
            DUF260  27 pkkfanvhklFGasnvlkllkalpeeeredamsslvyeAearardPvyGavgvilklqqqleqlkaelallkeel 101
                         +f  +h +FGas+++++l++lp +er  a   +++eA+ara dP yG+v+ il+lq+q+ + +a+l++++e+l
  Pd.00g294840.m01 149 ITDFSSIHNVFGASKMSRILSTLPMSERAVASWMMTFEAHARAMDPTYGCVSYILDLQEQVLNIQAQLDEAHEQL 223
                       4789******************************************************************99985 PP
Sequence ? help Back to Top
Protein Sequence    Length: 333 aa     Download sequence    
MSRILSMLPM SERAVASWTM TFEAHARAVD PIYGATSYIL DLQEQVLNIQ AQLDEAHEQL  60
ACAIAPVADP NQDLENSIEQ SEVANPTEQA AVAKPTEFES LPQFSFTHTN NVYNENMNLN  120
YHVSGSYKNS VNIPTENVAD GWVNNEEAIT DFSSIHNVFG ASKMSRILST LPMSERAVAS  180
WMMTFEAHAR AMDPTYGCVS YILDLQEQVL NIQAQLDEAH EQLARAVAPV ANPNQDMENS  240
NEQSEVAKPT EFESLPQFSF THTNNVDNEN MNLNYHVSGS YKNTVNIPTE NVADGWVNNE  300
GTSSMCFFDM EWSFEDVDEL LCRSVVFNIY IQH
Best hit in Arabidopsis thaliana ? help Back to Top
Hit ID E-value Description
AT3G58190.16e-23LBD family protein