PlantTFDB - Plant Transcription Factor Database @ CBI, PKU

PlantRegMap/PlantTFDB v5.0

Plant Transcription Factor Database

Transcription Factor Information

Basic Information | Signature Domain | Sequence |

Basic Information? help Back to Top

TF ID

Pd.00g293320.m01

Organism

Prunus domestica

Taxonomic ID

3758

Taxonomic Lineage

cellular organisms; Eukaryota; Viridiplantae; Streptophyta; Streptophytina; Embryophyta; Tracheophyta; Euphyllophyta; Spermatophyta; Magnoliophyta; Mesangiospermae; eudicotyledons; Gunneridae; Pentapetalae; rosids; fabids; Rosales; Rosaceae; Amygdaloideae; Amygdaleae; Prunus

Family

LSD

Protein Properties

Length: 613aa MW: 68913 Da PI: 9.4434

Description

LSD family protein

Gene Model

Gene Model ID	Type	Source	Coding Sequence
Pd.00g293320.m01	genome	GDR	View CDS

Signature Domain? help Back to Top

No.	Domain	Score	E-value	Start	End	HMM Start	HMM End
1	zf-LSD1	38.2	2.3e-12	444	468	1	25
zf-LSD1 1 CggCrtlLsYPrGApsVRCalCdtV 25 C+gCr +L YPrGA++V+CalC+ + Pd.00g293320.m01 444 CSGCRSILLYPRGATNVCCALCNII 468 **********************975 PP
2	zf-LSD1	41.3	2.5e-13	483	507	1	25
zf-LSD1 1 CggCrtlLsYPrGApsVRCalCdtV 25 CggCrtlL+ +rGA+sVRC++C+tV Pd.00g293320.m01 483 CGGCRTLLMHTRGATSVRCSCCHTV 507 ************************9 PP
3	zf-LSD1	45.1	1.6e-14	521	545	1	25
zf-LSD1 1 CggCrtlLsYPrGApsVRCalCdtV 25 Cg+Crt+L+YP+GApsV+Ca+C+ V Pd.00g293320.m01 521 CGNCRTTLMYPYGAPSVKCAVCHYV 545 **********************987 PP

Sequence ? help Back to Top
Protein Sequence Length: 613 aa Download sequence
MFVKMMRVRC MGAFSNPIAS NTAPVARGVV KFEFFEQNQM GTQFTRWIMK HPHQHFLAVR 60 LKTTSSQYVA SRARDPTFEK LMDKYKNLLK VIAVQDLILA NPTNPAVSID FLSRLSQKLH 120 LNRGAVSFLR KYPHIFHIYH DPMKCQTFCR LTDAAIQISK EEAEVINASL PLVVDRLVRL 180 LSMSRSRMLP LRAILKVGRE LGLPDDFEDS VISRNSHLFQ LCDAHEPNTH NLKLFDVIPD 240 KFTAAVENWR VEEYCKEGCN VDRAEIQFSF KHGYPPGMRL RKNFRAKVKE WQRLPYVGPY 300 DEVSEKKRSS KAGMMAVEKR AVATVHEFLN LTVEKTVEVE KISHFRKWFG FDLNIRDLFL 360 DHPGIFYLST KGKRHTVFLR EAYERGCLIH PNPVYHARRK LLDLVVLGRH GLLTDELRSI 420 ASNKEAESLG QYDGETCMQS QLVCSGCRSI LLYPRGATNV CCALCNIITP VPPPGTEMAQ 480 LICGGCRTLL MHTRGATSVR CSCCHTVNLA PASSQVAHVN CGNCRTTLMY PYGAPSVKCA 540 VCHYVTNVGM TNMRVPIPVH RPNGTANSGM APSTSTAMPH SQSQTVVVEN PMSVDESGKL 600 VSNVVVGVTT GKK

Sequence ? help Back to Top

Protein Sequence Length: 613 aa Download sequence

MFVKMMRVRC MGAFSNPIAS NTAPVARGVV KFEFFEQNQM GTQFTRWIMK HPHQHFLAVR  60
LKTTSSQYVA SRARDPTFEK LMDKYKNLLK VIAVQDLILA NPTNPAVSID FLSRLSQKLH  120
LNRGAVSFLR KYPHIFHIYH DPMKCQTFCR LTDAAIQISK EEAEVINASL PLVVDRLVRL  180
LSMSRSRMLP LRAILKVGRE LGLPDDFEDS VISRNSHLFQ LCDAHEPNTH NLKLFDVIPD  240
KFTAAVENWR VEEYCKEGCN VDRAEIQFSF KHGYPPGMRL RKNFRAKVKE WQRLPYVGPY  300
DEVSEKKRSS KAGMMAVEKR AVATVHEFLN LTVEKTVEVE KISHFRKWFG FDLNIRDLFL  360
DHPGIFYLST KGKRHTVFLR EAYERGCLIH PNPVYHARRK LLDLVVLGRH GLLTDELRSI  420
ASNKEAESLG QYDGETCMQS QLVCSGCRSI LLYPRGATNV CCALCNIITP VPPPGTEMAQ  480
LICGGCRTLL MHTRGATSVR CSCCHTVNLA PASSQVAHVN CGNCRTTLMY PYGAPSVKCA  540
VCHYVTNVGM TNMRVPIPVH RPNGTANSGM APSTSTAMPH SQSQTVVVEN PMSVDESGKL  600
VSNVVVGVTT GKK

Best hit in Arabidopsis thaliana ? help Back to Top
Hit ID	E-value	Description
AT4G20380.2	6e-72	LSD family protein