PlantTFDB - Plant Transcription Factor Database @ CBI, PKU

PlantRegMap/PlantTFDB v5.0

Plant Transcription Factor Database

Transcription Factor Information

Basic Information | Signature Domain | Sequence |

Basic Information? help Back to Top

TF ID

Pd.00g292050.m01

Organism

Prunus domestica

Taxonomic ID

3758

Taxonomic Lineage

cellular organisms; Eukaryota; Viridiplantae; Streptophyta; Streptophytina; Embryophyta; Tracheophyta; Euphyllophyta; Spermatophyta; Magnoliophyta; Mesangiospermae; eudicotyledons; Gunneridae; Pentapetalae; rosids; fabids; Rosales; Rosaceae; Amygdaloideae; Amygdaleae; Prunus

Family

MIKC_MADS

Protein Properties

Length: 808aa MW: 92089.3 Da PI: 8.995

Description

MIKC_MADS family protein

Gene Model

Gene Model ID	Type	Source	Coding Sequence
Pd.00g292050.m01	genome	GDR	View CDS

Signature Domain? help Back to Top

No.	Domain	Score	E-value	Start	End	HMM Start	HMM End
1	SRF-TF	77.3	1.2e-24	9	59	1	51
S---SHHHHHHHHHHHHHHHHHHHHHHHHHHT-EEEEEEE-TTSEEEEEE- CS SRF-TF 1 krienksnrqvtfskRrngilKKAeELSvLCdaevaviifsstgklyeyss 51 +rien + rqvtf+kRr+g++KK +ELSvLCda++ ++ifsstgk++ y+s Pd.00g292050.m01 9 SRIENRTTRQVTFAKRRAGLIKKTHELSVLCDAQIGLVIFSSTGKMFQYCS 59 59***********************************************96 PP
2	K-box	59.5	1.4e-20	76	162	6	91
K-box 6 gks.leeakaeslqqelakLkkeienLqreqRhllGedLesLslkeLqqLeqqLekslkkiRskKnellleqieelqkkekelqeen 91 g++ +++++e+++ el+k+++e+++L+ ++ ++ GedL+ +++L +Le+qLe+s++++R++K e+l +qi++l+ k++q++ Pd.00g292050.m01 76 GTRiFQHNDTEYMNAELRKMRRETHSLELSLQRYTGEDLSCVRFEDLVELEHQLEESVNRVRARKFEVLQQQIDNLRATIKAHQDAA 162 555567899********************************************************************9999888765 PP

Sequence ? help Back to Top
Protein Sequence Length: 808 aa Download sequence
MGRGKITISR IENRTTRQVT FAKRRAGLIK KTHELSVLCD AQIGLVIFSS TGKMFQYCSE 60 SSSMEELIQR YQVARGTRIF QHNDTEYMNA ELRKMRRETH SLELSLQRYT GEDLSCVRFE 120 DLVELEHQLE ESVNRVRARK FEVLQQQIDN LRATIKAHQD AAFGHEQAHE AEQVENLQIL 180 PKSEEHRHVL EQFPFGGEEQ PSSVLKLAMP QTQFNPYSLQ PPHQPNLLDF NLSGRSIYAK 240 VSPTTRTAYV SAVRRTHPQP KAMPMGLSEL RSTKTKKTTK PSSPSSTSPH AHQTLTLPQF 300 LSMARKSSLL KQSLATIVVV LLIYAFLNTF LTPTTTAKLE TALPSFSSAS SISSDVFASR 360 ENQLNFPGKP VKVYLYDLPK RFTYGVIEHH SLARGGQPDE DVSKLKYPGH QHMGEWYLFK 420 DLLKPESERF GSPVQKVLDP EEADFFYVPF FSSLSLIVNP ARPASGSDKP LYSDEENQVA 480 LIEWLEEQVY WKRNNGRDHV IMASDPNALY KVIDKVKNSV LLVCDFGRLK EDQGSLVKDV 540 IVPYSHRINT YSGDISVEDR NTLLFFMGNR FRKEGGKIRD LLFQLLENEE DVIIKHGTQS 600 RESRRAASRG MHTSKFCLNP AGDTPSACRL FDSIVSLCVP VIVSDSIELP FEDVIDYRKI 660 AIFVESNAAL KPEFLVSMLR GITTERILEY QKEMNEVKRY FQYGVPNGTV NEIWRQVAQK 720 LPFIKLSINR DMRLVKRDLN RTLSTLKEAT PPLSIIRCFI FRSPRLGSTI GREGFFSASW 780 KSDDFVLCYK LLITKLKDSL TDGVFTEG

Sequence ? help Back to Top

Protein Sequence Length: 808 aa Download sequence

MGRGKITISR IENRTTRQVT FAKRRAGLIK KTHELSVLCD AQIGLVIFSS TGKMFQYCSE  60
SSSMEELIQR YQVARGTRIF QHNDTEYMNA ELRKMRRETH SLELSLQRYT GEDLSCVRFE  120
DLVELEHQLE ESVNRVRARK FEVLQQQIDN LRATIKAHQD AAFGHEQAHE AEQVENLQIL  180
PKSEEHRHVL EQFPFGGEEQ PSSVLKLAMP QTQFNPYSLQ PPHQPNLLDF NLSGRSIYAK  240
VSPTTRTAYV SAVRRTHPQP KAMPMGLSEL RSTKTKKTTK PSSPSSTSPH AHQTLTLPQF  300
LSMARKSSLL KQSLATIVVV LLIYAFLNTF LTPTTTAKLE TALPSFSSAS SISSDVFASR  360
ENQLNFPGKP VKVYLYDLPK RFTYGVIEHH SLARGGQPDE DVSKLKYPGH QHMGEWYLFK  420
DLLKPESERF GSPVQKVLDP EEADFFYVPF FSSLSLIVNP ARPASGSDKP LYSDEENQVA  480
LIEWLEEQVY WKRNNGRDHV IMASDPNALY KVIDKVKNSV LLVCDFGRLK EDQGSLVKDV  540
IVPYSHRINT YSGDISVEDR NTLLFFMGNR FRKEGGKIRD LLFQLLENEE DVIIKHGTQS  600
RESRRAASRG MHTSKFCLNP AGDTPSACRL FDSIVSLCVP VIVSDSIELP FEDVIDYRKI  660
AIFVESNAAL KPEFLVSMLR GITTERILEY QKEMNEVKRY FQYGVPNGTV NEIWRQVAQK  720
LPFIKLSINR DMRLVKRDLN RTLSTLKEAT PPLSIIRCFI FRSPRLGSTI GREGFFSASW  780
KSDDFVLCYK LLITKLKDSL TDGVFTEG

Best hit in Arabidopsis thaliana ? help Back to Top
Hit ID	E-value	Description
AT5G23260.2	3e-48	MIKC_MADS family protein