PlantTFDB
PlantRegMap/PlantTFDB v5.0
Plant Transcription Factor Database
Home  TFext  BLAST  Prediction  Download  Help  About  Links  PlantRegMap
(e.g., LFY)
Transcription Factor Information
Basic Information | Signature Domain | Sequence | 
Basic Information? help Back to Top
TF ID Pd.00g285390.m01
Organism
Prunus domestica
Taxonomic ID
Taxonomic Lineage
cellular organisms; Eukaryota; Viridiplantae; Streptophyta; Streptophytina; Embryophyta; Tracheophyta; Euphyllophyta; Spermatophyta; Magnoliophyta; Mesangiospermae; eudicotyledons; Gunneridae; Pentapetalae; rosids; fabids; Rosales; Rosaceae; Amygdaloideae; Amygdaleae; Prunus
Family GRAS
Protein Properties Length: 496aa    MW: 55758 Da    PI: 6.6617
Description GRAS family protein
Gene Model
Gene Model ID Type Source Coding Sequence
Pd.00g285390.m01genomeGDRView CDS
Signature Domain? help Back to Top
Signature Domain
No. Domain Score E-value Start End HMM Start HMM End
1GRAS317.23.5e-971444901374
              GRAS   1 lvelLlecAeavssgdlelaqalLarlselaspdg.dpmqRlaayfteALaarlarsvselykalppsetseknsseelaalklfsevsPilk 92 
                       l++lL+ecA a+s ++l +a+++L +ls++asp+g +  +R++ayf++A+ +r+ +s+ ++++ l   ++         +a+++f+ +sP++k
  Pd.00g285390.m01 144 LITLLFECAVAISVDNLPEAHRMLLELSQMASPYGpSCAERVVAYFAKAMTSRVINSWLGICSPLVNYKS-------IHSAFQAFNTISPFIK 229
                       5789*******************************9999***********************87765554.......468999********** PP

              GRAS  93 fshltaNqaIleavegeervHiiDfdisqGlQWpaLlqaLasRpegppslRiTgvgspesgskeeleetgerLakfAeelgvpfefnvlvakr 185
                       f+h+t NqaIlea+++ +r          GlQWpaL++ La+R egpp++R+Tgvg     s+e+l etg++L++fA++lg++fef++ ++++
  Pd.00g285390.m01 230 FAHFTSNQAILEAFHRRDR----------GLQWPALFHILATRMEGPPQVRMTGVGT----SSENLMETGKQLSNFAKRLGLSFEFHP-IVRK 307
                       ****************986..........****************************....9**************************.799* PP

              GRAS 186 ledleleeLrvkpgEalaVnlvlqlhrlldesvsleserdevLklvkslsPkvvvvveqeadhnsesFlerflealeyysalfdsleaklpre 278
                       + d++ ++ +v++gE+laV++    h+l+d +++  +    +++l+ +l P++v++veq+++h s+sFl+rf+ +l+yys++fdsle+ l+++
  Pd.00g285390.m01 308 IGDIDASMVQVRRGETLAVHWLQ--HSLYDATGPDWK----TMRLIEELAPRIVTLVEQDMSH-SGSFLDRFVGSLHYYSTMFDSLESYLSSD 393
                       **********************9..999999999888....**********************.899************************** PP

              GRAS 279 seerikvErellgreivnvvacegaerrerhetlekWrerle.eaGFkpvplsekaakqaklllrkvk.sdgyrveeesgslvlgWkdrpLvs 369
                       +  r++vE+ l+ rei n++a  g +r  +  ++++Wr+ l+ + GF +v +s + ++qa+l+l++++  +gy++ + +g++ lgWkd +L++
  Pd.00g285390.m01 394 NPSRHNVEHCLFYREINNILAIGGPARSGED-KFRQWRSELGgRNGFMQVGMSANSMAQAQLILNMFPpTHGYSLVQGDGTIRLGWKDTSLYV 485
                       **************************77665.5*******9637************************************************* PP

              GRAS 370 vSaWr 374
                       +SaW+
  Pd.00g285390.m01 486 ASAWT 490
                       ****6 PP
Sequence ? help Back to Top
Protein Sequence    Length: 496 aa     Download sequence    
MAHGTMNMIQ SHEPWTNYPS PVVGFQNNPT SNPFPNPKPI ENRFVTLERS ELSQWVEHIT  60
KQLIDDLPEP AAATTTTDTL QASDDYFIPS SLSTDLISPS KISQRSYGDH HDHELQWGNE  120
LQLHADNNIR ARGMSKLDEH GLSLITLLFE CAVAISVDNL PEAHRMLLEL SQMASPYGPS  180
CAERVVAYFA KAMTSRVINS WLGICSPLVN YKSIHSAFQA FNTISPFIKF AHFTSNQAIL  240
EAFHRRDRGL QWPALFHILA TRMEGPPQVR MTGVGTSSEN LMETGKQLSN FAKRLGLSFE  300
FHPIVRKIGD IDASMVQVRR GETLAVHWLQ HSLYDATGPD WKTMRLIEEL APRIVTLVEQ  360
DMSHSGSFLD RFVGSLHYYS TMFDSLESYL SSDNPSRHNV EHCLFYREIN NILAIGGPAR  420
SGEDKFRQWR SELGGRNGFM QVGMSANSMA QAQLILNMFP PTHGYSLVQG DGTIRLGWKD  480
TSLYVASAWT CSHASR
Best hit in Arabidopsis thaliana ? help Back to Top
Hit ID E-value Description
AT3G54220.11e-132GRAS family protein