PlantTFDB
PlantRegMap/PlantTFDB v5.0
Plant Transcription Factor Database
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(e.g., LFY)
Transcription Factor Information
Basic Information | Signature Domain | Sequence | 
Basic Information? help Back to Top
TF ID Pd.00g280480.m01
Organism
Prunus domestica
Taxonomic ID
Taxonomic Lineage
cellular organisms; Eukaryota; Viridiplantae; Streptophyta; Streptophytina; Embryophyta; Tracheophyta; Euphyllophyta; Spermatophyta; Magnoliophyta; Mesangiospermae; eudicotyledons; Gunneridae; Pentapetalae; rosids; fabids; Rosales; Rosaceae; Amygdaloideae; Amygdaleae; Prunus
Family M-type_MADS
Protein Properties Length: 291aa    MW: 32487.5 Da    PI: 9.145
Description M-type_MADS family protein
Gene Model
Gene Model ID Type Source Coding Sequence
Pd.00g280480.m01genomeGDRView CDS
Signature Domain? help Back to Top
Signature Domain
No. Domain Score E-value Start End HMM Start HMM End
1SRF-TF62.64.3e-20140188149
                       S---SHHHHHHHHHHHHHHHHHHHHHHHHHHT-EEEEEEE-TTSEEEEE CS
            SRF-TF   1 krienksnrqvtfskRrngilKKAeELSvLCdaevaviifsstgklyey 49 
                       k++e+k +r+vtfskR+ g++ KA ELSvLC+ae a i++ss+gk++ +
  Pd.00g280480.m01 140 KKVEEKNKRHVTFSKRKRGLFNKAAELSVLCGAETAGIVVSSNGKVFCF 188
                       57899****************************************9877 PP
Sequence ? help Back to Top
Protein Sequence    Length: 291 aa     Download sequence    
MAKRGADESE ITNDDNINGK RQRTDPTMAK MGAAESEITN DNNINGKRQI TDPTMAKMGA  60
AESEITNDYN INGKRQITNP TLAKMGAAES GITNDNNING KRPRTDPTMA KRGAAEIEIT  120
NDDNINGKRS SKRQRRVEIK KVEEKNKRHV TFSKRKRGLF NKAAELSVLC GAETAGIVVS  180
SNGKVFCFGS PSADTVIHRY LGHNASSLLH AGQPDIHHVN GEVRYCPYNI SSHVNIMRNE  240
RGGWCYGWWE KPIEMTTSLE EMEEYMAALR QLKHNVEVRT NQMVMNVGYN C
Best hit in Arabidopsis thaliana ? help Back to Top
Hit ID E-value Description
AT1G72350.11e-20M-type_MADS family protein