PlantRegMap/PlantTFDB v5.0
Plant Transcription
Factor Database
|
Home TFext BLAST Prediction Download Help About Links PlantRegMap |
Transcription Factor Information
Basic Information? help Back to Top | |||||||||
---|---|---|---|---|---|---|---|---|---|
TF ID | Pd.00g278100.m01 | ||||||||
Organism | |||||||||
Taxonomic ID | |||||||||
Taxonomic Lineage |
cellular organisms; Eukaryota; Viridiplantae; Streptophyta; Streptophytina; Embryophyta; Tracheophyta; Euphyllophyta; Spermatophyta; Magnoliophyta; Mesangiospermae; eudicotyledons; Gunneridae; Pentapetalae; rosids; fabids; Rosales; Rosaceae; Amygdaloideae; Amygdaleae; Prunus
|
||||||||
Family | MYB_related | ||||||||
Protein Properties | Length: 464aa MW: 53012.1 Da PI: 8.8712 | ||||||||
Description | MYB_related family protein | ||||||||
Gene Model |
|
Signature Domain? help Back to Top | |||||||
---|---|---|---|---|---|---|---|
No. | Domain | Score | E-value | Start | End | HMM Start | HMM End |
1 | Myb_DNA-binding | 26.9 | 1.1e-08 | 359 | 407 | 3 | 48 |
SS-HHHHHHHHHHHHHTTTT-HHHHHHHHT...TTS-HHHHHHHHHHHT CS Myb_DNA-binding 3 rWTteEdellvdavkqlGggtWktIartmg...kgRtlkqcksrwqkyl 48 +WT E +l+++v q G g+W++ r + +Rt+ ++k++w+++l Pd.00g278100.m01 359 SWTSSEVMKLIEGVSQCGVGRWSAMKRLLFsscSHRTAVDIKDKWRNLL 407 6***********************888887*****************96 PP |
Sequence ? help Back to Top |
---|
Protein Sequence Length: 464 aa Download sequence |
MFQGMDNAVC HGRTSLPTCQ EYLWEAKHSD KVFKLEGGPD SCLQNAGLES HSPGVYKEYC 60 GAEMSDLSCE STPRLGYKDN RSSLLLDRMS VQERQLVFRN MFRYETPIID KQWPKHSISP 120 GLQNFFELES GSNLAECGLM TKKNEGKTVL SSSIEFFGMD TGTIKGSLSD EGMSRDLQVK 180 WKKLADLESL KTSNSRVSEI ELCSSDERDK AGAFAMQKRS RRPPRRYIEE LAQSKSKFYS 240 RKCGVACKRS KNSFLHVRSD KNNRQKETQE ETLLCQDKSY EVGCIQVPFG LPVEAGQLEE 300 HNSSLNSEDC KEDHKLLRSS EKLEIEYSPA KSREEISDDE CVLRRSTQKG SKQIKHYTSW 360 TSSEVMKLIE GVSQCGVGRW SAMKRLLFSS CSHRTAVDIK DKWRNLLKAS CTQLQKERKI 420 KRDISKQASD HVPESVLQRV RELAVIYPYP RRKRTLRIAR TTDS |
Best hit in Arabidopsis thaliana ? help Back to Top | ||||||
---|---|---|---|---|---|---|
Hit ID | E-value | Description | ||||
AT1G72650.1 | 2e-28 | MYB_related family protein |