PlantTFDB
PlantRegMap/PlantTFDB v5.0
Plant Transcription Factor Database
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(e.g., LFY)
Transcription Factor Information
Basic Information | Signature Domain | Sequence | 
Basic Information? help Back to Top
TF ID Pd.00g276260.m01
Organism
Prunus domestica
Taxonomic ID
Taxonomic Lineage
cellular organisms; Eukaryota; Viridiplantae; Streptophyta; Streptophytina; Embryophyta; Tracheophyta; Euphyllophyta; Spermatophyta; Magnoliophyta; Mesangiospermae; eudicotyledons; Gunneridae; Pentapetalae; rosids; fabids; Rosales; Rosaceae; Amygdaloideae; Amygdaleae; Prunus
Family C3H
Protein Properties Length: 374aa    MW: 40930.3 Da    PI: 8.005
Description C3H family protein
Gene Model
Gene Model ID Type Source Coding Sequence
Pd.00g276260.m01genomeGDRView CDS
Signature Domain? help Back to Top
Signature Domain
No. Domain Score E-value Start End HMM Start HMM End
1zf-CCCH38.22.4e-12427226
                      -S---SGGGGTS--TTTTT-SS-SS CS
           zf-CCCH  2 ktelCrffartGtCkyGdrCkFaHg 26
                      k+e+C++f+r G C++GdrCkF H+
  Pd.00g276260.m01  4 KREPCKYFQR-GSCQFGDRCKFLHV 27
                      89********.*************6 PP
Sequence ? help Back to Top
Protein Sequence    Length: 374 aa     Download sequence    
MPVKREPCKY FQRGSCQFGD RCKFLHVIQQ QQKSNIFGFG PQSGSDQQRK SNPYGFGVQN  60
NSQSKGPADF GSKQSQFKPF ENKWSRFSSQ TASAAPSSQK SDKQPQATNH RCTDPDSCRS  120
IIIEDNEHES PLWKLTCYGH FKNFPCDIVG DISYEELRAA AYDDAKHGLN MQSIIERERN  180
LLNTKLIEFD KLCKPQGALL KPNHSSQNPF PSASQNAFLQ AANNSAAPSL SSFSQLGTSL  240
NTGFGPRPSA PSNNGFAQLN PFANSTQTSS GFGTNNFLSG SAGFGNTGVM RHETNPFSTL  300
AVSSQIPSAT TGLPPILSDG PTSSNAVRQS TTEVQFLTNM QREKISGETS IWLKKIWSPG  360
EIPEEEPPDA LVEL
Best hit in Arabidopsis thaliana ? help Back to Top
Hit ID E-value Description
AT1G75340.21e-58C3H family protein