PlantTFDB
PlantRegMap/PlantTFDB v5.0
Plant Transcription Factor Database
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(e.g., LFY)
Transcription Factor Information
Basic Information | Signature Domain | Sequence | 
Basic Information? help Back to Top
TF ID Pd.00g271870.m01
Organism
Prunus domestica
Taxonomic ID
Taxonomic Lineage
cellular organisms; Eukaryota; Viridiplantae; Streptophyta; Streptophytina; Embryophyta; Tracheophyta; Euphyllophyta; Spermatophyta; Magnoliophyta; Mesangiospermae; eudicotyledons; Gunneridae; Pentapetalae; rosids; fabids; Rosales; Rosaceae; Amygdaloideae; Amygdaleae; Prunus
Family GRAS
Protein Properties Length: 538aa    MW: 59408 Da    PI: 4.9422
Description GRAS family protein
Gene Model
Gene Model ID Type Source Coding Sequence
Pd.00g271870.m01genomeGDRView CDS
Signature Domain? help Back to Top
Signature Domain
No. Domain Score E-value Start End HMM Start HMM End
1GRAS441.75.2e-1351685381374
              GRAS   1 lvelLlecAeavssgdlelaqalLarlselaspdgdpmqRlaayfteALaarlarsvselykalppsetseknsseelaalklfsevsPilkf 93 
                       l+e+L +cA+a++++d++ ++ l+++l++++s +g+p+qRl ay++e+L arla+s+s +y+al+++e +   s+e l+++++++e++P++kf
  Pd.00g271870.m01 168 LKEVLCACAKALANSDMSTTELLMSNLRQMVSVSGEPIQRLGAYILEGLVARLASSGSAIYAALRCKEPA---SAELLSYMHVLYEICPYFKF 257
                       5789*****************************************************************9...9******************* PP

              GRAS  94 shltaNqaIleavegeervHiiDfdisqGlQWpaLlqaLasRpegppslRiTgvgspesg..skeeleetgerLakfAeelgvpfefnvlvak 184
                       +++ aN aI ea++ e+rvHiiDf++ qG QW++L+qaLa+Rp+gpp++RiTg+++++s   +   l  +g+rL+++Ae+++vpfef++ +  
  Pd.00g271870.m01 258 GYMSANGAIAEAMKDESRVHIIDFQVAQGSQWITLIQALAARPGGPPQVRITGIDDSTSAyaRGGGLGLVGQRLSRLAESCKVPFEFHA-AGI 349
                       ********************************************************998899999************************.788 PP

              GRAS 185 rledleleeLrvkpgEalaVnlvlqlhrlldesvsleserdevLklvkslsPkvvvvveqeadhnsesFlerflealeyysalfdsleaklpr 277
                       + ++++le+++v+pgEa+aVn++++lh+++desvs +++rd++L+lvkslsPkvv++veqe+++n+++Fl rf+e+l+y+ a+fds+++ lpr
  Pd.00g271870.m01 350 SASEVQLEDIEVRPGEAIAVNFAFMLHHMPDESVSCQNHRDRLLRLVKSLSPKVVTLVEQESNTNTAPFLPRFAETLNYFRAIFDSIDVALPR 442
                       9******************************************************************************************** PP

              GRAS 278 eseerikvErellgreivnvvacegaerrerhetlekWrerleeaGFkpvplsekaakqaklllrkvksdgyrveeesgslvlgWkdrpLvsv 370
                       e++eri+vE+++l+reivn++aceg er+er e l+kW++r+ +aGF+p+pls+ ++ ++k+ll+ ++++ y++ee++g+l+lgW+++ Lv+ 
  Pd.00g271870.m01 443 EHKERINVEQHCLAREIVNIIACEGMERVERYELLSKWKSRFIMAGFSPYPLSSLVNGTIKTLLQSYSEK-YTLEERDGALYLGWMNQVLVAS 534
                       ********************************************************************65.********************** PP

              GRAS 371 SaWr 374
                       +aWr
  Pd.00g271870.m01 535 CAWR 538
                       ***8 PP
Sequence ? help Back to Top
Protein Sequence    Length: 538 aa     Download sequence    
MQESQKHIIS NVSHGCGEQP VEEPESYSWP PIHSVDHQAS SDEVIQGTQL SVQHLAQYCT  60
HESSSGTSTY HPVHSSPSSI GFSANGSPTS HPDLQNYQSC GSPVNQSCLS NDTDDLGHKM  120
RELESVLLGD DLDAFDMYAI TDELGPNQLS SEAENREQMM EMISRGDLKE VLCACAKALA  180
NSDMSTTELL MSNLRQMVSV SGEPIQRLGA YILEGLVARL ASSGSAIYAA LRCKEPASAE  240
LLSYMHVLYE ICPYFKFGYM SANGAIAEAM KDESRVHIID FQVAQGSQWI TLIQALAARP  300
GGPPQVRITG IDDSTSAYAR GGGLGLVGQR LSRLAESCKV PFEFHAAGIS ASEVQLEDIE  360
VRPGEAIAVN FAFMLHHMPD ESVSCQNHRD RLLRLVKSLS PKVVTLVEQE SNTNTAPFLP  420
RFAETLNYFR AIFDSIDVAL PREHKERINV EQHCLAREIV NIIACEGMER VERYELLSKW  480
KSRFIMAGFS PYPLSSLVNG TIKTLLQSYS EKYTLEERDG ALYLGWMNQV LVASCAWR
Best hit in Arabidopsis thaliana ? help Back to Top
Hit ID E-value Description
AT5G48150.10.0GRAS family protein