PlantRegMap/PlantTFDB v5.0
Plant Transcription
Factor Database
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Transcription Factor Information
Basic Information? help Back to Top | |||||||||
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TF ID | Pd.00g270830.m01 | ||||||||
Organism | |||||||||
Taxonomic ID | |||||||||
Taxonomic Lineage |
cellular organisms; Eukaryota; Viridiplantae; Streptophyta; Streptophytina; Embryophyta; Tracheophyta; Euphyllophyta; Spermatophyta; Magnoliophyta; Mesangiospermae; eudicotyledons; Gunneridae; Pentapetalae; rosids; fabids; Rosales; Rosaceae; Amygdaloideae; Amygdaleae; Prunus
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Family | Trihelix | ||||||||
Protein Properties | Length: 449aa MW: 51172.4 Da PI: 6.1765 | ||||||||
Description | Trihelix family protein | ||||||||
Gene Model |
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Signature Domain? help Back to Top | |||||||
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No. | Domain | Score | E-value | Start | End | HMM Start | HMM End |
1 | trihelix | 69.7 | 5.7e-22 | 122 | 218 | 1 | 85 |
trihelix 1 rWtkqevlaLiearremeerlrrgk...........lkkplWeevskkmrergferspkqCkekwenlnkrykkikegekkr.tsessstcpy 81 +Wt++ v++Li+++ ++++ ++ +kk++W+ vsk m ++g+++sp+qC++k+++lnkryk+++++ +++ +++++++ ++ Pd.00g270830.m01 122 KWTDNVVRLLIAIVACVGDDGTLESgeglkrksgilQKKGKWKTVSKIMISKGCHVSPQQCEDKFNDLNKRYKRLNDILGRGtSCRVVENPAL 214 7**************555554432223555666888**********************************************66999999988 PP trihelix 82 fdql 85 d++ Pd.00g270830.m01 215 MDSM 218 8887 PP |
Sequence ? help Back to Top |
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Protein Sequence Length: 449 aa Download sequence |
MDSSGLGSGF LSGPSGGILD LESSIPRRQE IQLGHPLLAH HQHHMNVMSG VKGDHDPIGL 60 VEVKGSIPKV CSTTVKGKAV APFNANNGYN LSDEDEPSYT DDGGENFEGA KGKKGSPWQR 120 MKWTDNVVRL LIAIVACVGD DGTLESGEGL KRKSGILQKK GKWKTVSKIM ISKGCHVSPQ 180 QCEDKFNDLN KRYKRLNDIL GRGTSCRVVE NPALMDSMPH LSAKAKDDVR KILSSKHLFY 240 KEMCAYHNGQ RIPDCHDLDL QGYSLPLGRG SKDNNGSDEE EAEENHDTED DELDHEDDND 300 ADNDRERMRR MGDRKKASEE DGHFWPQYVL DSFEVEMGEI FQDPTKSLWE RRDWIKKQKL 360 QLQEQRVGFQ AEALELEKQR YKWLRYCSKK DRELERLRLE NERMKLENER KVLQLRQKEL 420 EIDLRRSDTS LEPSSLGLGR DQIDLGRLQ |
Nucleic Localization Signal ? help Back to Top | |||
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No. | Start | End | Sequence |
1 | 305 | 316 | RERMRRMGDRKK |
Best hit in Arabidopsis thaliana ? help Back to Top | ||||||
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Hit ID | E-value | Description | ||||
AT1G21200.1 | 9e-72 | Trihelix family protein |