PlantTFDB
PlantRegMap/PlantTFDB v5.0
Plant Transcription Factor Database
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(e.g., LFY)
Transcription Factor Information
Basic Information | Signature Domain | Sequence | 
Basic Information? help Back to Top
TF ID Pd.00g241420.m01
Organism
Prunus domestica
Taxonomic ID
Taxonomic Lineage
cellular organisms; Eukaryota; Viridiplantae; Streptophyta; Streptophytina; Embryophyta; Tracheophyta; Euphyllophyta; Spermatophyta; Magnoliophyta; Mesangiospermae; eudicotyledons; Gunneridae; Pentapetalae; rosids; fabids; Rosales; Rosaceae; Amygdaloideae; Amygdaleae; Prunus
Family ARF
Protein Properties Length: 1043aa    MW: 116370 Da    PI: 8.1967
Description ARF family protein
Gene Model
Gene Model ID Type Source Coding Sequence
Pd.00g241420.m01genomeGDRView CDS
Signature Domain? help Back to Top
Signature Domain
No. Domain Score E-value Start End HMM Start HMM End
1B376.72.6e-2485186199
                       EEEE-..-HHHHTT-EE--HHH.HTT......---..--SEEEEEETTS-EEEEEE..EEETTEEEE-TTHHHHHHHHT--TT-EEEEEE-SS CS
                B3   1 ffkvltpsdvlksgrlvlpkkfaeeh......ggkkeesktltledesgrsWevkliyrkksgryvltkGWkeFvkangLkegDfvvFkldgr 87 
                       f+k+lt sd++++g +++p++ ae++      + +++ s++l+ +d++g +W++++iyr++++r++lt+GW+ Fv+ ++L +gD v+F   + 
  Pd.00g241420.m01  85 FCKTLTASDTSTHGGFSVPRRAAEDCfppldyN-QQRPSQELVAKDLHGLEWRFRHIYRGQPRRHLLTTGWSAFVNKKKLVSGDAVLFL--RG 174
                       99****************************963.3445679************************************************..34 PP

                       SEE..EEEEE-S CS
                B3  88 sefelvvkvfrk 99 
                       +++el+++++r+
  Pd.00g241420.m01 175 DDGELRLGIRRA 186
                       89999****996 PP
2Auxin_resp117.89e-39211292182
        Auxin_resp   1 aahaastksvFevvYnPrastseFvvkvekvekalkvkvsvGmRfkmafetedsserrlsGtvvgvsdldpvrWpnSkWrsL 82 
                       +++a+s+k++F+++YnPras+seF+++ +k+++ l++++s+GmRfkm+feted++err++G+++g+s+ldpvrWp+SkWr+L
  Pd.00g241420.m01 211 VVNAISMKNAFNIFYNPRASSSEFIIPSRKFLRCLDHSFSPGMRFKMRFETEDAAERRYTGLITGISELDPVRWPGSKWRCL 292
                       6899*****************************************************************************9 PP
Sequence ? help Back to Top
Protein Sequence    Length: 1043 aa     Download sequence    
MASKVGHLEQ VSDFPASAYD LPPHLFCRVV DVKLHAETGT DDVYAQVSLV PESEEIEHKL  60
REGETDAYGE EDVEAIGKST TPHMFCKTLT ASDTSTHGGF SVPRRAAEDC FPPLDYNQQR  120
PSQELVAKDL HGLEWRFRHI YRGQPRRHLL TTGWSAFVNK KKLVSGDAVL FLRGDDGELR  180
LGIRRAAQVK GCATYPTLCS QQLNYNTITD VVNAISMKNA FNIFYNPRAS SSEFIIPSRK  240
FLRCLDHSFS PGMRFKMRFE TEDAAERRYT GLITGISELD PVRWPGSKWR CLVVRWDDIE  300
TSKHGRVSPW EIEPSGSVSS SHSLMAAGLK RARSGLSAAK TEFPVPNGIG ASDFGESLRF  360
QKVLQGQEIL GFDTHFSGLG GQNQHPSEPR RGFHGSSGSG IAAGGNGLRK SLVDSEITST  420
GIGFGESFRF HKVLQGQEIF PSPPYGRAST NNEAHEYGGP GIYDGFQVPS FRNGWSAMMQ  480
SNNAHVHPSA SSVQVSSPSS VLMFQQAMNP GPEFNSVYNG HNQEEQRVIK RTPYVSESDG  540
GKQASSSFCE RSFSREDHGG MNSYNQRSIS NHPVTSQSTF SGSQDAVSPY KGSCRLFGFS  600
LSEEKRVPAR ESNSTSTAST LNPGVQFHSK PALMTSAVGI TCTKEWAFDW LTRNVTIMSI  660
IMLCTGEVSW ATEILFRLSV CCRLCNLTFE YFHRLKRKSL IQALDKIKSE LMLLGFISLL  720
LTVGQKPIAN ICIPKSVGES FLPCKSSTFG HTVEETKCSD QGKVSLMSRE GAYELQYLIF  780
VLAMFHVSSC VLTFALGMAK MKRWESWEAE TRTLEYQFSY GFYNYLWVPF IPLVMLLLVG  840
TKLQGIITKM CLDSHDKSHV VRGTLLVKPS NHFFWFNWPQ LLLHLLHFIL FQNSFQLAFF  900
TWTWYKFGLR SCFHHETEDI VIRLGMGVIV QILCGYVTLP LYALVTQMGT SMRKAVFTEN  960
VVKGLKKWRA KARKNLALRN HPHSARLSLD ASLETSLSLG TSPSLSGHDA SFSTVDFDRP  1020
SDDAEYVALE IREAQKAQGE TST
Best hit in Arabidopsis thaliana ? help Back to Top
Hit ID E-value Description
AT2G33860.10.0ARF family protein