PlantTFDB
PlantRegMap/PlantTFDB v5.0
Plant Transcription Factor Database
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(e.g., LFY)
Transcription Factor Information
Basic Information | Signature Domain | Sequence | 
Basic Information? help Back to Top
TF ID Pd.00g236500.m02
Organism
Prunus domestica
Taxonomic ID
Taxonomic Lineage
cellular organisms; Eukaryota; Viridiplantae; Streptophyta; Streptophytina; Embryophyta; Tracheophyta; Euphyllophyta; Spermatophyta; Magnoliophyta; Mesangiospermae; eudicotyledons; Gunneridae; Pentapetalae; rosids; fabids; Rosales; Rosaceae; Amygdaloideae; Amygdaleae; Prunus
Family MIKC_MADS
Protein Properties Length: 279aa    MW: 31715.3 Da    PI: 7.3716
Description MIKC_MADS family protein
Gene Model
Gene Model ID Type Source Coding Sequence
Pd.00g236500.m02genomeGDRView CDS
Signature Domain? help Back to Top
Signature Domain
No. Domain Score E-value Start End HMM Start HMM End
1SRF-TF88.24.6e-28959151
                      S---SHHHHHHHHHHHHHHHHHHHHHHHHHHT-EEEEEEE-TTSEEEEEE- CS
            SRF-TF  1 krienksnrqvtfskRrngilKKAeELSvLCdaevaviifsstgklyeyss 51
                      krien   rqvtfskRr+g+lKKA+EL +LCdaevaviifs+tgkl+e+ss
  Pd.00g236500.m02  9 KRIENANSRQVTFSKRRAGLLKKAQELAILCDAEVAVIIFSNTGKLFEFSS 59
                      79***********************************************96 PP
2K-box60.28.4e-21841531281
             K-box  12 akaeslqqelakLkkeienLqreqRhllGedLesLslkeLqqLeqqLekslkkiRskKnellleqieelq 81 
                       + +++ ++el+ Lk+e  +Lq++q +llG+dL+ LslkeLqqLeqqL+++l +++++K++ll+eq+e+++
  Pd.00g236500.m02  84 KAEKQDSKELDVLKDEFAKLQKKQVRLLGKDLTGLSLKELQQLEQQLNEGLLSVKERKEQLLVEQLEQSR 153
                       44567899***********************************************************987 PP
Sequence ? help Back to Top
Protein Sequence    Length: 279 aa     Download sequence    
MGRGKIEIKR IENANSRQVT FSKRRAGLLK KAQELAILCD AEVAVIIFSN TGKLFEFSSA  60
GMKRTLSRYN KCLDCSEDAA EECKAEKQDS KELDVLKDEF AKLQKKQVRL LGKDLTGLSL  120
KELQQLEQQL NEGLLSVKER KEQLLVEQLE QSRVQFFLIY LCSGFKSLAL WYKLHNDLAS  180
TLRAILENET LRRQVEELRC LFPQTDRPVP SYLEYYPVEK EKSLVNHGVT SPDLVSNFAF  240
ENGDSDITLH LGLPSDVYGK RKAPEREAHS NDSGSQLAL
Best hit in Arabidopsis thaliana ? help Back to Top
Hit ID E-value Description
AT5G13790.16e-74MIKC_MADS family protein