PlantTFDB
PlantRegMap/PlantTFDB v5.0
Plant Transcription Factor Database
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(e.g., LFY)
Transcription Factor Information
Basic Information | Signature Domain | Sequence | 
Basic Information? help Back to Top
TF ID Pd.00g231510.m01
Organism
Prunus domestica
Taxonomic ID
Taxonomic Lineage
cellular organisms; Eukaryota; Viridiplantae; Streptophyta; Streptophytina; Embryophyta; Tracheophyta; Euphyllophyta; Spermatophyta; Magnoliophyta; Mesangiospermae; eudicotyledons; Gunneridae; Pentapetalae; rosids; fabids; Rosales; Rosaceae; Amygdaloideae; Amygdaleae; Prunus
Family C3H
Protein Properties Length: 407aa    MW: 45958.6 Da    PI: 8.4483
Description C3H family protein
Gene Model
Gene Model ID Type Source Coding Sequence
Pd.00g231510.m01genomeGDRView CDS
Signature Domain? help Back to Top
Signature Domain
No. Domain Score E-value Start End HMM Start HMM End
1zf-CCCH17.86.1e-0690113226
                       -S---SGGGGTS--TTTTT-SS-SS CS
           zf-CCCH   2 ktelCrffartGtCkyGdrCkFaHg 26 
                       k  lC f+ + G+C  G +CkF+H+
  Pd.00g231510.m01  90 KSILCEFYKA-GQCAKGFKCKFSHD 113
                       6679**7777.*************7 PP
Sequence ? help Back to Top
Protein Sequence    Length: 407 aa     Download sequence    
MPPKQQSKAD LAKKQKIVED KTFGLKNKNK SKNVQKYVQT LKQSVQPQSD PSKTAAKKKK  60
EEEKAKDKEL NELFKVAVSQ PKVPVGVDPK SILCEFYKAG QCAKGFKCKF SHDLNVQRKG  120
EKIDIYSDKR DHDTMEEWDQ ETLEKVVESK KNEYQQNKPT DIVCKYFLEA VEKKQYGWFW  180
VCPNGGKNCH YRHALPPGYV LKSQMKALLE EEAEKIPIEE EIENQRAKVT TSTPMTPELF  240
MQWKKKKMAE RDAGLAAQMA ERAKNDRMSG RELFLSDSSL FVDDVEAHEK YQRDQEPAVA  300
EQKVSANSNG DRPSDSATAG AKDINADMNY KRFDLYFSGC IGACASCVAT FLWQLSPLPT  360
LEATPTTNLT KLDIILTLIW PLFGGSLALL VFEGLACSIG RAICFGI
Best hit in Arabidopsis thaliana ? help Back to Top
Hit ID E-value Description
AT2G20280.11e-157C3H family protein