PlantTFDB
PlantRegMap/PlantTFDB v5.0
Plant Transcription Factor Database
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(e.g., LFY)
Transcription Factor Information
Basic Information | Signature Domain | Sequence | 
Basic Information? help Back to Top
TF ID Pd.00g226620.m01
Organism
Prunus domestica
Taxonomic ID
Taxonomic Lineage
cellular organisms; Eukaryota; Viridiplantae; Streptophyta; Streptophytina; Embryophyta; Tracheophyta; Euphyllophyta; Spermatophyta; Magnoliophyta; Mesangiospermae; eudicotyledons; Gunneridae; Pentapetalae; rosids; fabids; Rosales; Rosaceae; Amygdaloideae; Amygdaleae; Prunus
Family SRS
Protein Properties Length: 289aa    MW: 29427.2 Da    PI: 9.3453
Description SRS family protein
Gene Model
Gene Model ID Type Source Coding Sequence
Pd.00g226620.m01genomeGDRView CDS
Signature Domain? help Back to Top
Signature Domain
No. Domain Score E-value Start End HMM Start HMM End
1DUF702222.11.2e-68702303153
            DUF702   3 sgtasCqdCGnqakkdCaheRCRtCCksrgfdCathvkstWvpaakrrerqqqlaaasskaaasa.aeaaskrkrelkskkqsalsstklssa 94 
                       + t++CqdCGnqakkdC+h+RCRtCCksrgfdCathvkstWvpaa+rrerq +  aa   a +++ +++++k++r l  ++q+++s+t++s++
  Pd.00g226620.m01  70 ASTMTCQDCGNQAKKDCTHRRCRTCCKSRGFDCATHVKSTWVPAARRRERQLMSGAAGGGAGSNSgSTSSAKKPR-LVGASQTTTSHTSTSNT 161
                       5789************************************************99999999998884455555555.56999999********* PP

            DUF702  95 eskkeletss..........lPeevsseavfrcvrvssvddgeeelaYqtavsigGhvfkGiLydqGle 153
                       +++++ +tss          lP +v+++avf+cvrv++v+dg++e+aYq++v+igGhvfkG+LydqG+e
  Pd.00g226620.m01 162 TPPRSYDTSSshqdagfkesLPGQVRAPAVFKCVRVTAVEDGDDEYAYQAVVKIGGHVFKGFLYDQGVE 230
                       ********999********************************************************98 PP
Sequence ? help Back to Top
Protein Sequence    Length: 289 aa     Download sequence    
MSSGQHRNNR SAGGGGGIQL WQQPQPHFFK KTAHDLAATS LGGTHLVQSG GGGGVGNNVM  60
NSGSAAASGA STMTCQDCGN QAKKDCTHRR CRTCCKSRGF DCATHVKSTW VPAARRRERQ  120
LMSGAAGGGA GSNSGSTSSA KKPRLVGASQ TTTSHTSTSN TTPPRSYDTS SSHQDAGFKE  180
SLPGQVRAPA VFKCVRVTAV EDGDDEYAYQ AVVKIGGHVF KGFLYDQGVE GREGFPNISE  240
LHLGGGGGTS GGGNGGRNGA SSPILDTSDV YGASSGGLLG GSNFGNPIN
Best hit in Arabidopsis thaliana ? help Back to Top
Hit ID E-value Description
AT5G12330.12e-76SRS family protein