PlantTFDB
PlantRegMap/PlantTFDB v5.0
Plant Transcription Factor Database
Home  TFext  BLAST  Prediction  Download  Help  About  Links  PlantRegMap
(e.g., LFY)
Transcription Factor Information
Basic Information | Signature Domain | Sequence | 
Basic Information? help Back to Top
TF ID Pd.00g221640.m01
Organism
Prunus domestica
Taxonomic ID
Taxonomic Lineage
cellular organisms; Eukaryota; Viridiplantae; Streptophyta; Streptophytina; Embryophyta; Tracheophyta; Euphyllophyta; Spermatophyta; Magnoliophyta; Mesangiospermae; eudicotyledons; Gunneridae; Pentapetalae; rosids; fabids; Rosales; Rosaceae; Amygdaloideae; Amygdaleae; Prunus
Family GRAS
Protein Properties Length: 511aa    MW: 56498.9 Da    PI: 5.5537
Description GRAS family protein
Gene Model
Gene Model ID Type Source Coding Sequence
Pd.00g221640.m01genomeGDRView CDS
Signature Domain? help Back to Top
Signature Domain
No. Domain Score E-value Start End HMM Start HMM End
1GRAS324.32.5e-991545104374
              GRAS   4 lLlecAeavssgdlelaqalLarlselaspdgdpmqRlaayfteALaarlarsvselykalppsetseknsseelaalklfsevsPilkfshl 96 
                       lL+++Ae +++g+ +laq +Larl+++ sp g+p+qR+a+yf+eAL+  l+   ++  ++ + s+    + + ++ a+k fse+sP+l+f+++
  Pd.00g221640.m01 154 LLFNAAELIETGNPALAQGILARLNHQLSPIGKPFQRAAFYFKEALQLLLHI-NTSSNSSNALSPF---SLIFKIGAYKSFSEISPVLQFANF 242
                       799*********************************************9998.3333333444444...49********************** PP

              GRAS  97 taNqaIleavegeervHiiDfdisqGlQWpaLlqaLasRpegppslRiTgvgspesgskeeleetgerLakfAeelgvpfefnvlvakrledl 189
                       t+NqaIleaveg +rvH+iDfdi++G+QW++++q+ a R+ g+ps++iT++ s++++++ e+  t+e+L++fA+el+++fe +++  ++l+  
  Pd.00g221640.m01 243 TCNQAILEAVEGFNRVHVIDFDIGYGGQWASFMQEVALRNCGAPSFKITAFISSSTHDEFEIGFTRENLKHFASELNLSFELELVSLEALN-S 334
                       *****************************************************9*9***************************97444444.4 PP

              GRAS 190 eleeLrvkpgEalaVnlvlqlhrlldesvsleserdevLklvkslsPkvvvvveqeadhnsesFlerflealeyysalfdsl.eaklpresee 281
                         + L ++  E +aV + l + ++ ++++sl+      L++vk+lsPk+vv  ++ +d+++ +F++++++al+ ys l++sl ++++    ++
  Pd.00g221640.m01 335 GSWGLPLHVSEGVAVAVNLPIGSFSNNPLSLTM----ALRFVKQLSPKIVVSLDRGSDRTDVTFAHQVIQALHSYSGLLESLdAVNV--SPDA 421
                       467776666777777777777888889999999....*********************************************55554..4478 PP

              GRAS 282 rikvErellgreivnvvacegaerrerhetlekWrerleeaGFkpvplsekaakqaklllrkvksdgyrveeesgslvlgWkdrpLvsvSaWr 374
                        +k+Er ll++ i+++v+ ++ +     ++   Wr  ++++GF+p+++s+++++qa++l++++++ g+++e+++ slvl+W+++ L+sv++Wr
  Pd.00g221640.m01 422 LQKIERYLLQPGIEKIVTGRHLS----PKRTPPWRTLFSSSGFSPLTFSNFTESQAECLVQRTPVGGFHIEKRQSSLVLCWQRKDLISVTVWR 510
                       899***************99998....9999*************************************************************8 PP
Sequence ? help Back to Top
Protein Sequence    Length: 511 aa     Download sequence    
MEDWDGVLSD SPGQEQSILR LIMSDIEDPS LGLNKLLQSG SGSDQQDLEF SAGFHDVVDQ  60
GGYDGFEPNT GNLQQQQHIG MDEKPQIFNP QMVMNQNQAQ FTQNPAMFMP LTYAQLQEHH  120
LLSPPPPKRL NSGGFGPNYP GQRAPFSNPG QELLLFNAAE LIETGNPALA QGILARLNHQ  180
LSPIGKPFQR AAFYFKEALQ LLLHINTSSN SSNALSPFSL IFKIGAYKSF SEISPVLQFA  240
NFTCNQAILE AVEGFNRVHV IDFDIGYGGQ WASFMQEVAL RNCGAPSFKI TAFISSSTHD  300
EFEIGFTREN LKHFASELNL SFELELVSLE ALNSGSWGLP LHVSEGVAVA VNLPIGSFSN  360
NPLSLTMALR FVKQLSPKIV VSLDRGSDRT DVTFAHQVIQ ALHSYSGLLE SLDAVNVSPD  420
ALQKIERYLL QPGIEKIVTG RHLSPKRTPP WRTLFSSSGF SPLTFSNFTE SQAECLVQRT  480
PVGGFHIEKR QSSLVLCWQR KDLISVTVWR C
Best hit in Arabidopsis thaliana ? help Back to Top
Hit ID E-value Description
AT4G00150.11e-157GRAS family protein