PlantTFDB - Plant Transcription Factor Database @ CBI, PKU

PlantRegMap/PlantTFDB v5.0

Plant Transcription Factor Database

Transcription Factor Information

Basic Information | Signature Domain | Sequence |

Basic Information? help Back to Top

TF ID

Pd.00g220530.m01

Organism

Prunus domestica

Taxonomic ID

3758

Taxonomic Lineage

cellular organisms; Eukaryota; Viridiplantae; Streptophyta; Streptophytina; Embryophyta; Tracheophyta; Euphyllophyta; Spermatophyta; Magnoliophyta; Mesangiospermae; eudicotyledons; Gunneridae; Pentapetalae; rosids; fabids; Rosales; Rosaceae; Amygdaloideae; Amygdaleae; Prunus

Family

C3H

Protein Properties

Length: 1015aa MW: 111499 Da PI: 5.1108

Description

C3H family protein

Gene Model

Gene Model ID	Type	Source	Coding Sequence
Pd.00g220530.m01	genome	GDR	View CDS

Signature Domain? help Back to Top

No.	Domain	Score	E-value	Start	End	HMM Start	HMM End
1	zf-CCCH	24.5	4.8e-08	608	628	5	25
--SGGGGTS--TTTTT-SS-S CS zf-CCCH 5 lCrffartGtCkyGdrCkFaH 25 +C++f ++G+C++GdrC F+H Pd.00g220530.m01 608 PCNNFKENGFCSRGDRCMFSH 628 7******************** PP

Sequence ? help Back to Top
Protein Sequence Length: 1015 aa Download sequence
MEEANIETEK PSQTLIAFPP HCRRHLKSGT YRTLVRILSH CYDESQHSAA DQNVPQELNQ 60 DNGSIEPVQA TEKEVLGNVE LDGPGSMGPK NSAAEEVGVA DESCNPNDFQ EQLEQIKSIL 120 NVEENEDFSK LNEVMDIENI LAIDYQDLDF DPEQILMDEP ERIAKGNEDD THRPSASLDQ 180 NQSGSDKVAL LTNQEEHGAT VISESSGQMV SGTLDSSLHT VAMGESSNQR ESNEQNSLLM 240 TNRLDVEPIM QQKAMELETY VSSEGAKESC IPITEVGAIK EPENFSQKVP DSFDFSLNKD 300 MVAEASKPTE YSKDKSSSRE NNDLEVEHEM QQKDKELEEI VCTRTAINSP SHISEDIEEG 360 EISSDDGMDD GSNDVLLHDT VVLEEKKVPE VQIFKDVLDR KEHSCKVAND KDFGSNSFLV 420 DMVDEGKIDR GAELRESIRT EMICRPGVVE GKNVKALKVD ESNPLLEGGR IEMQDNGVRM 480 GIGCPAAGNH GITSEEMWDD GAFGFADVTI SNISFCEQCI VQAKERKKRA EKNRELGVKR 540 LKLHPIQKAK TVAYCRHFVR GRCHEGDKCK FSHDTVPLTK SKPCVHFARQ SCMKGDDCQY 600 DHELSKYPCN NFKENGFCSR GDRCMFSHKM PSNEDSATAA CKPELKPPMV LNNSRSQQVN 660 TGGASQQNVH ALAYSTGIHS RNNTKQNVTQ TVLKQPEPAN KGISFPSILK SSLVHSSMSK 720 QEGLAPDRNN GAKAGNQIDQ SPLSSVQNSI EILKRTPPVT TPKGINFLSF GKASPDDARG 780 KNQVSRQTSP SVSETVKNLN GMLKANQSAA LQGTHFNPFG KSSVASSSSE KPVSLPSFWN 840 HGSNIDSCGS QTTADKSQNS SGISLRLPPS PLTSGQSSDC IASSQLALLV LKLTTKLGIA 900 VSVTELNDKK GPLATRIKIF ICSVWSNTPE KVQSYYVASR VPFACTCSKS LTRIISAAVS 960 KVQFAVFLFT LFVEIHPPSS AAGIDLRLQV TCNSKLVESY AHLYPFLLPF EKFDN

Sequence ? help Back to Top

Protein Sequence Length: 1015 aa Download sequence

MEEANIETEK PSQTLIAFPP HCRRHLKSGT YRTLVRILSH CYDESQHSAA DQNVPQELNQ  60
DNGSIEPVQA TEKEVLGNVE LDGPGSMGPK NSAAEEVGVA DESCNPNDFQ EQLEQIKSIL  120
NVEENEDFSK LNEVMDIENI LAIDYQDLDF DPEQILMDEP ERIAKGNEDD THRPSASLDQ  180
NQSGSDKVAL LTNQEEHGAT VISESSGQMV SGTLDSSLHT VAMGESSNQR ESNEQNSLLM  240
TNRLDVEPIM QQKAMELETY VSSEGAKESC IPITEVGAIK EPENFSQKVP DSFDFSLNKD  300
MVAEASKPTE YSKDKSSSRE NNDLEVEHEM QQKDKELEEI VCTRTAINSP SHISEDIEEG  360
EISSDDGMDD GSNDVLLHDT VVLEEKKVPE VQIFKDVLDR KEHSCKVAND KDFGSNSFLV  420
DMVDEGKIDR GAELRESIRT EMICRPGVVE GKNVKALKVD ESNPLLEGGR IEMQDNGVRM  480
GIGCPAAGNH GITSEEMWDD GAFGFADVTI SNISFCEQCI VQAKERKKRA EKNRELGVKR  540
LKLHPIQKAK TVAYCRHFVR GRCHEGDKCK FSHDTVPLTK SKPCVHFARQ SCMKGDDCQY  600
DHELSKYPCN NFKENGFCSR GDRCMFSHKM PSNEDSATAA CKPELKPPMV LNNSRSQQVN  660
TGGASQQNVH ALAYSTGIHS RNNTKQNVTQ TVLKQPEPAN KGISFPSILK SSLVHSSMSK  720
QEGLAPDRNN GAKAGNQIDQ SPLSSVQNSI EILKRTPPVT TPKGINFLSF GKASPDDARG  780
KNQVSRQTSP SVSETVKNLN GMLKANQSAA LQGTHFNPFG KSSVASSSSE KPVSLPSFWN  840
HGSNIDSCGS QTTADKSQNS SGISLRLPPS PLTSGQSSDC IASSQLALLV LKLTTKLGIA  900
VSVTELNDKK GPLATRIKIF ICSVWSNTPE KVQSYYVASR VPFACTCSKS LTRIISAAVS  960
KVQFAVFLFT LFVEIHPPSS AAGIDLRLQV TCNSKLVESY AHLYPFLLPF EKFDN