PlantRegMap/PlantTFDB v5.0
Plant Transcription
Factor Database
|
Home TFext BLAST Prediction Download Help About Links PlantRegMap |
Transcription Factor Information
Basic Information? help Back to Top | |||||||||
---|---|---|---|---|---|---|---|---|---|
TF ID | Pd.00g210110.m01 | ||||||||
Organism | |||||||||
Taxonomic ID | |||||||||
Taxonomic Lineage |
cellular organisms; Eukaryota; Viridiplantae; Streptophyta; Streptophytina; Embryophyta; Tracheophyta; Euphyllophyta; Spermatophyta; Magnoliophyta; Mesangiospermae; eudicotyledons; Gunneridae; Pentapetalae; rosids; fabids; Rosales; Rosaceae; Amygdaloideae; Amygdaleae; Prunus
|
||||||||
Family | C3H | ||||||||
Protein Properties | Length: 1008aa MW: 109856 Da PI: 9.3841 | ||||||||
Description | C3H family protein | ||||||||
Gene Model |
|
Signature Domain? help Back to Top | |||||||
---|---|---|---|---|---|---|---|
No. | Domain | Score | E-value | Start | End | HMM Start | HMM End |
1 | zf-CCCH | 36.6 | 7.6e-12 | 4 | 27 | 2 | 26 |
-S---SGGGGTS--TTTTT-SS-SS CS zf-CCCH 2 ktelCrffartGtCkyGdrCkFaHg 26 k+e+C++f+r G C++GdrCkF H+ Pd.00g210110.m01 4 KREPCKYFQR-GSCQFGDRCKFLHV 27 89********.*************6 PP |
Sequence ? help Back to Top |
---|
Protein Sequence Length: 1008 aa Download sequence |
MPVKREPCKY FQRGSCQFGD RCKFLHVIQQ QQKSNIFGFG PQSGSDQQRK SNPYGFGVQN 60 NSQSKGPADF GSKQSQFKPF ENKWSRFSSQ TASAAPSSQK SDKQPQATNH RCTDPDSCRS 120 IIIEDNEHES PLWKLTCYGH WKNFPCDIVG DTSYEELRAA AYDDAKHGLN MQSIIERERN 180 LLNTKLIEFD KLCKPQGALL KPNHSSQNPF PSASQNAFLQ AANNSAAPSL SSFSQLGTSL 240 NTGFGPRPSA PSNNGFAQLN PFANSTQTSS GFGTNNFLSG SAGFGNTGVM RHETNPFSTL 300 AVSSQIPSAT TGLPSILSDG PTSASNAVRQ STTEVQFLTN MQREKISGET SIWLKKIWSP 360 GEIPEEEPPD ALVEFQSLEM LRKEGLPPIV RPNIPIIFCN ICKGFCIYLM LYTVPVKSAA 420 TSSTSSGEGS LGVVKVDPTL NFENPRLRQA YIALQAWKAA IFSDPFNFTS SWNGSDVCSY 480 MGVFCAPMST GAHGRVVAGI DLNHADIASY LPPELGLLSD LALFHLNSNR FCGVVPSSLR 540 RMKLLHELDL SNNRFVGDFP KVVFSLPSLK YLDLRFNKFE GSVPSQLFDK DLDAIFLNDN 600 RFQFGIPPNL GNSPVSVMVL ANNNLGGCIP GSIGNMAKTL NEIILSNDNL TGCLPPQIGL 660 LTNLTVFDVS FNRLQGPLPS TIGKNMKSLE ELDVARNRLT GVIPASICQL PRLHNFTYSF 720 NYFTGEAPAC AANKNNINGR KNCIRGKLDQ RSARECASPA ARPVDYRKLQ CSSTTSPGGG 780 GGSGGGSKRR PPPPSAPVGN KPPAQRRPPR VSTPPPPTSE SSPSTRSHPP PPSNPSSSSS 840 SPPLVPNRAP PPSNSNSHSH SPTKPPPPTQ RVSPRTHLPP SPPPSRSHHH WTLTPPPPPT 900 QNVSPTTHLR PPPPPLPTHY NSSSSPPPPV LYHASPPDHS KHDLVSPSPP NQYSIQKYHL 960 LPPHMSIIHQ KLHHHPQVQV EVPHMIRHQP PHQVSHLIPY LHCRPPVV |
Best hit in Arabidopsis thaliana ? help Back to Top | ||||||
---|---|---|---|---|---|---|
Hit ID | E-value | Description | ||||
AT1G75340.2 | 3e-56 | C3H family protein |