PlantTFDB
PlantRegMap/PlantTFDB v5.0
Plant Transcription Factor Database
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(e.g., LFY)
Transcription Factor Information
Basic Information | Signature Domain | Sequence | 
Basic Information? help Back to Top
TF ID Pd.00g207410.m01
Organism
Prunus domestica
Taxonomic ID
Taxonomic Lineage
cellular organisms; Eukaryota; Viridiplantae; Streptophyta; Streptophytina; Embryophyta; Tracheophyta; Euphyllophyta; Spermatophyta; Magnoliophyta; Mesangiospermae; eudicotyledons; Gunneridae; Pentapetalae; rosids; fabids; Rosales; Rosaceae; Amygdaloideae; Amygdaleae; Prunus
Family MIKC_MADS
Protein Properties Length: 223aa    MW: 25499.2 Da    PI: 10.342
Description MIKC_MADS family protein
Gene Model
Gene Model ID Type Source Coding Sequence
Pd.00g207410.m01genomeGDRView CDS
Signature Domain? help Back to Top
Signature Domain
No. Domain Score E-value Start End HMM Start HMM End
1SRF-TF85.82.6e-27959151
                      S---SHHHHHHHHHHHHHHHHHHHHHHHHHHT-EEEEEEE-TTSEEEEEE- CS
            SRF-TF  1 krienksnrqvtfskRrngilKKAeELSvLCdaevaviifsstgklyeyss 51
                      k+i+n++ rqvtfskRr g++KKA+ELS+LCdae+a+++fs tgkl+e+ s
  Pd.00g207410.m01  9 KKIDNTTARQVTFSKRRRGLFKKAQELSTLCDAEIALVVFSATGKLFEFTS 59
                      68***********************************************75 PP
2K-box52.81.7e-18871691597
             K-box  15 eslqqelakLkkeienLqreqRhllGedLesLslkeLqqLeqqLekslkkiRskKnellleqieelqkkekelqeenkaLrkk 97 
                       +  +  +a L+kei +  +e+R+l+Ge+L++L++keLq+Le+ L ++l+++R+ K e++l++i  l+ k  ++ +enk+L+++
  Pd.00g207410.m01  87 QLESSTSAALRKEIAENTHELRKLMGEELQELNMKELQELEKLLGSGLRRVRDAKGEIVLKEITSLKWKGSQMIQENKRLKQM 169
                       5556778899*****99***************************************************************997 PP
Sequence ? help Back to Top
Protein Sequence    Length: 223 aa     Download sequence    
MTRRKIQIKK IDNTTARQVT FSKRRRGLFK KAQELSTLCD AEIALVVFSA TGKLFEFTSS  60
SVQQVIERHG LLSSNFDRLN QPSLELQLES STSAALRKEI AENTHELRKL MGEELQELNM  120
KELQELEKLL GSGLRRVRDA KGEIVLKEIT SLKWKGSQMI QENKRLKQMA NRQVQTLELE  180
RGQSFEPIGD FIHSDPSQDH DSSDTSLKLG LAFPNRIRQM KSS
Best hit in Arabidopsis thaliana ? help Back to Top
Hit ID E-value Description
AT2G22540.13e-70MIKC_MADS family protein