PlantTFDB - Plant Transcription Factor Database @ CBI, PKU

PlantRegMap/PlantTFDB v5.0

Plant Transcription Factor Database

Transcription Factor Information

Basic Information | Signature Domain | Sequence |

Basic Information? help Back to Top

TF ID

Pd.00g202540.m01

Organism

Prunus domestica

Taxonomic ID

3758

Taxonomic Lineage

cellular organisms; Eukaryota; Viridiplantae; Streptophyta; Streptophytina; Embryophyta; Tracheophyta; Euphyllophyta; Spermatophyta; Magnoliophyta; Mesangiospermae; eudicotyledons; Gunneridae; Pentapetalae; rosids; fabids; Rosales; Rosaceae; Amygdaloideae; Amygdaleae; Prunus

Family

C3H

Protein Properties

Length: 968aa MW: 112746 Da PI: 6.8659

Description

C3H family protein

Gene Model

Gene Model ID	Type	Source	Coding Sequence
Pd.00g202540.m01	genome	GDR	View CDS

Signature Domain? help Back to Top

No.	Domain	Score	E-value	Start	End	HMM Start	HMM End
1	zf-CCCH	19	2.4e-06	155	174	6	25
-SGGGGTS--TTTTT-SS-S CS zf-CCCH 6 CrffartGtCkyGdrCkFaH 25 C+f+++tG C++G rC++ H Pd.00g202540.m01 155 CPFHLKTGACRFGQRCSRVH 174 ******************99 PP
2	zf-CCCH	24.3	5.3e-08	343	370	1	26
--S---SGGGGTS..--TTTTT-SS-SS CS zf-CCCH 1 yktelCrffartG..tCkyGdrCkFaHg 26 +k ++C ++++ tC++G C+F+H+ Pd.00g202540.m01 343 WKVAICGEYMKSRykTCSHGTACNFIHC 370 899************************8 PP

Sequence ? help Back to Top
Protein Sequence Length: 968 aa Download sequence
MSEALDLFNE MRLRLLHPSL LTFVNLLGVL ADLFTLELSK QIHGLVTKYG YCLDVENEND 60 GNEVDDWDYI EEGPAEIIWQ GNEIIVKKKR IKVPKRNTEQ QSRKEDCDRP TSNPLPPQSE 120 AFSDYKNSSM TAQQLIENVA QQVPHFGTEQ DKAHCPFHLK TGACRFGQRC SRVHFYPDKS 180 STLLIKNMYN GPGLAWEQDE VLERFICDIH IGGDSRAHFK PGVDNSQFSA LDEDFQCGET 240 CVKKCMLFLK SKVGGTVVVI SLHTDEEVER CYEEFYEDVH TEFLKFGEII NFKVCRNGAF 300 HLRGNVYIHY KSLDSAVLAH QSINGRYFAG KQISCEFINV TRWKVAICGE YMKSRYKTCS 360 HGTACNFIHC FRNPGGDYEW ADSDRPAPKY WVRKMVALFG YSDADEKQMV EENFGQLRNS 420 SKMTMADSER YGLRRSRSRG RDYSSFVGSG RRYDSEDYVL KDAERQRHTG DDRHRGNTLD 480 EDRCEENKNL KDYHCRKSRR SDTEFDRQLL DREEDRDRHH GHTRKSSRQR NRDHKNKTYE 540 NESDGDLSDR ARNRVAQHGC TRESSSQQRK GEFLDEYGDW QNKNHEVDRD WSDRDKDRDA 600 YHDNRKSSGH KRKVGCPDNH NDSKNRAHDM DEEWSDSNSK GGKHHSRRKR FGHISKASEF 660 LNHRGRTTRS CSYELSDDLL ENDTERNLSH ARKRSKRLDE VSDISDEDRF PTQNLEHRHD 720 RLSLEMREAG ALVKKLKSDG THESSSLGQD GERYRSHDFD IRYISDVHMD KQDRWEPEDG 780 SVEIFHNSKT KAGSSESYES GRPGPYNVRG ESSDFDSEDK VGQEDQYESD KVAHSKHQKS 840 RRKSTHDDRK HDSENRSLCS SQSSHRRHYN RLEATDSSED NNESGRKHNQ KHHADHRSRD 900 HKQDHKSRRY VTSDDVVELN GVFKDIKVEE MVSLLSCFVW QEKLKDATKP REELDLLFSV 960 TRYSSEGC

Sequence ? help Back to Top

Protein Sequence Length: 968 aa Download sequence

MSEALDLFNE MRLRLLHPSL LTFVNLLGVL ADLFTLELSK QIHGLVTKYG YCLDVENEND  60
GNEVDDWDYI EEGPAEIIWQ GNEIIVKKKR IKVPKRNTEQ QSRKEDCDRP TSNPLPPQSE  120
AFSDYKNSSM TAQQLIENVA QQVPHFGTEQ DKAHCPFHLK TGACRFGQRC SRVHFYPDKS  180
STLLIKNMYN GPGLAWEQDE VLERFICDIH IGGDSRAHFK PGVDNSQFSA LDEDFQCGET  240
CVKKCMLFLK SKVGGTVVVI SLHTDEEVER CYEEFYEDVH TEFLKFGEII NFKVCRNGAF  300
HLRGNVYIHY KSLDSAVLAH QSINGRYFAG KQISCEFINV TRWKVAICGE YMKSRYKTCS  360
HGTACNFIHC FRNPGGDYEW ADSDRPAPKY WVRKMVALFG YSDADEKQMV EENFGQLRNS  420
SKMTMADSER YGLRRSRSRG RDYSSFVGSG RRYDSEDYVL KDAERQRHTG DDRHRGNTLD  480
EDRCEENKNL KDYHCRKSRR SDTEFDRQLL DREEDRDRHH GHTRKSSRQR NRDHKNKTYE  540
NESDGDLSDR ARNRVAQHGC TRESSSQQRK GEFLDEYGDW QNKNHEVDRD WSDRDKDRDA  600
YHDNRKSSGH KRKVGCPDNH NDSKNRAHDM DEEWSDSNSK GGKHHSRRKR FGHISKASEF  660
LNHRGRTTRS CSYELSDDLL ENDTERNLSH ARKRSKRLDE VSDISDEDRF PTQNLEHRHD  720
RLSLEMREAG ALVKKLKSDG THESSSLGQD GERYRSHDFD IRYISDVHMD KQDRWEPEDG  780
SVEIFHNSKT KAGSSESYES GRPGPYNVRG ESSDFDSEDK VGQEDQYESD KVAHSKHQKS  840
RRKSTHDDRK HDSENRSLCS SQSSHRRHYN RLEATDSSED NNESGRKHNQ KHHADHRSRD  900
HKQDHKSRRY VTSDDVVELN GVFKDIKVEE MVSLLSCFVW QEKLKDATKP REELDLLFSV  960
TRYSSEGC

Best hit in Arabidopsis thaliana ? help Back to Top
Hit ID	E-value	Description
AT1G10320.1	1e-115	C3H family protein