PlantTFDB - Plant Transcription Factor Database @ CBI, PKU

PlantRegMap/PlantTFDB v5.0

Plant Transcription Factor Database

Transcription Factor Information

Basic Information | Signature Domain | Sequence |

Basic Information? help Back to Top

TF ID

Pd.00g195680.m01

Organism

Prunus domestica

Taxonomic ID

3758

Taxonomic Lineage

cellular organisms; Eukaryota; Viridiplantae; Streptophyta; Streptophytina; Embryophyta; Tracheophyta; Euphyllophyta; Spermatophyta; Magnoliophyta; Mesangiospermae; eudicotyledons; Gunneridae; Pentapetalae; rosids; fabids; Rosales; Rosaceae; Amygdaloideae; Amygdaleae; Prunus

Family

LBD

Protein Properties

Length: 342aa MW: 38091.5 Da PI: 4.4418

Description

LBD family protein

Gene Model

Gene Model ID	Type	Source	Coding Sequence
Pd.00g195680.m01	genome	GDR	View CDS

Signature Domain? help Back to Top

No.	Domain	Score	E-value	Start	End	HMM Start	HMM End
1	DUF260	96.1	3.7e-30	8	109	1	101
DUF260 1 aCaaCkvlrrkCakdCvlapyfpaeq.pkkfanvhklFGasnvlkllkalpeeeredamsslvyeAearardPvyGavgvilklqqqleqlka 92 +C aCk+l+++C+++C++apyf +e+ +f +h +FGa++++++l+ lp +er +a ++++eA+ara dP+yGa++ il+lq+q+ + +a Pd.00g195680.m01 8 PCGACKFLKQRCKRGCIFAPYFMHEEaITDFSSIHNVFGANKMSRILSMLPMSERAIASWTMTFEAHARAVDPIYGATSYILDLQEQVLNIQA 100 7*******************999856************************************************************* PP DUF260 93 elallkeel 101 +l++++e+l Pd.00g195680.m01 101 QLDEAHEQL 109 **99985 PP
2	DUF260	55.9	1.3e-17	199	272	28	101
DUF260 28 kkfanvhklFGasnvlkllkalpeeeredamsslvyeAearardPvyGavgvilklqqqleqlkaelallkeel 101 +f +h +FGas+++++l+ lp +er a ++++eA+ara dP yG+v+ il+lq+q+ + +a+l++++e+l Pd.00g195680.m01 199 MDFSSIHNVFGASKMSRILSMLPMSERAVASWTMTFEAHARAVDPTYGCVSYILDLQEQVLNIQAQLDEAHEQL 272 5799*****************************************************************99985 PP

Sequence ? help Back to Top
Protein Sequence Length: 342 aa Download sequence
MSSRTFNPCG ACKFLKQRCK RGCIFAPYFM HEEAITDFSS IHNVFGANKM SRILSMLPMS 60 ERAIASWTMT FEAHARAVDP IYGATSYILD LQEQVLNIQA QLDEAHEQLA CAIAPVADPN 120 QDLENSIEQS EVANPTEQAA VAKPTEFESL PQFSFTHTNN VYNENMNLNY HVSGSYKNSV 180 NIPTENVADG WVNNEEAIMD FSSIHNVFGA SKMSRILSML PMSERAVASW TMTFEAHARA 240 VDPTYGCVSY ILDLQEQVLN IQAQLDEAHE QLARAVAPVA NPNQDLENSN EQSEVANPTE 300 QAAVAKPTEF ESLPQFSFTH TNNVDNENMN LNYHVSGVIK IQ

Sequence ? help Back to Top

Protein Sequence Length: 342 aa Download sequence

MSSRTFNPCG ACKFLKQRCK RGCIFAPYFM HEEAITDFSS IHNVFGANKM SRILSMLPMS  60
ERAIASWTMT FEAHARAVDP IYGATSYILD LQEQVLNIQA QLDEAHEQLA CAIAPVADPN  120
QDLENSIEQS EVANPTEQAA VAKPTEFESL PQFSFTHTNN VYNENMNLNY HVSGSYKNSV  180
NIPTENVADG WVNNEEAIMD FSSIHNVFGA SKMSRILSML PMSERAVASW TMTFEAHARA  240
VDPTYGCVSY ILDLQEQVLN IQAQLDEAHE QLARAVAPVA NPNQDLENSN EQSEVANPTE  300
QAAVAKPTEF ESLPQFSFTH TNNVDNENMN LNYHVSGVIK IQ

Best hit in Arabidopsis thaliana ? help Back to Top
Hit ID	E-value	Description
AT3G58190.1	1e-38	LBD family protein