PlantTFDB
PlantRegMap/PlantTFDB v5.0
Plant Transcription Factor Database
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(e.g., LFY)
Transcription Factor Information
Basic Information | Signature Domain | Sequence | 
Basic Information? help Back to Top
TF ID Pd.00g193180.m02
Organism
Prunus domestica
Taxonomic ID
Taxonomic Lineage
cellular organisms; Eukaryota; Viridiplantae; Streptophyta; Streptophytina; Embryophyta; Tracheophyta; Euphyllophyta; Spermatophyta; Magnoliophyta; Mesangiospermae; eudicotyledons; Gunneridae; Pentapetalae; rosids; fabids; Rosales; Rosaceae; Amygdaloideae; Amygdaleae; Prunus
Family NF-YA
Protein Properties Length: 301aa    MW: 33412.4 Da    PI: 9.2965
Description NF-YA family protein
Gene Model
Gene Model ID Type Source Coding Sequence
Pd.00g193180.m02genomeGDRView CDS
Signature Domain? help Back to Top
Signature Domain
No. Domain Score E-value Start End HMM Start HMM End
1CBFB_NFYA103.91.5e-32144200158
         CBFB_NFYA   1 deplYVNaKQyqrIlkRRqkRakleeekkldeksrkpylheSRhkhAlrRpRgsgGrF 58 
                       d p+YVNaKQy++Il+RRq+Rakle+++kl  k+rkpylheSRh hAl+R RgsgGrF
  Pd.00g193180.m02 144 DGPIYVNAKQYHGILRRRQSRAKLEAQNKL-LKARKPYLHESRHLHALNRVRGSGGRF 200
                       57****************************.**************************9 PP
Sequence ? help Back to Top
Protein Sequence    Length: 301 aa     Download sequence    
MSWNPIEREI PQSSSKDASF KVEFTPQVRH DAKHLGLQLL PDQGSSSTTQ TISQSQDRCN  60
SSESGEDEIC GKGVEGQMKP VYLLNNLDLM SNPSQVGYGN LMGRVPYPYA DPYFSGFLAA  120
YGPQAMPQMI APTRVPLPLD LAEDGPIYVN AKQYHGILRR RQSRAKLEAQ NKLLKARKPY  180
LHESRHLHAL NRVRGSGGRF LSTKRLQQSD QNPSSSTRDV LDSVNLHQKD TQDTESHHLG  240
SSEFVTAVAT HSDIASVSHT NDIFRQQDRR FSGIPSHMGG AMQFRGGLMR AGTQHCASVV  300
R
Best hit in Arabidopsis thaliana ? help Back to Top
Hit ID E-value Description
AT1G72830.15e-52NF-YA family protein