PlantTFDB
PlantRegMap/PlantTFDB v5.0
Plant Transcription Factor Database
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(e.g., LFY)
Transcription Factor Information
Basic Information | Signature Domain | Sequence | 
Basic Information? help Back to Top
TF ID Pd.00g175450.m01
Organism
Prunus domestica
Taxonomic ID
Taxonomic Lineage
cellular organisms; Eukaryota; Viridiplantae; Streptophyta; Streptophytina; Embryophyta; Tracheophyta; Euphyllophyta; Spermatophyta; Magnoliophyta; Mesangiospermae; eudicotyledons; Gunneridae; Pentapetalae; rosids; fabids; Rosales; Rosaceae; Amygdaloideae; Amygdaleae; Prunus
Family C3H
Protein Properties Length: 333aa    MW: 36789.2 Da    PI: 8.4812
Description C3H family protein
Gene Model
Gene Model ID Type Source Coding Sequence
Pd.00g175450.m01genomeGDRView CDS
Signature Domain? help Back to Top
Signature Domain
No. Domain Score E-value Start End HMM Start HMM End
1zf-CCCH246.9e-08204224526
                       --SGGGGTS--TTTTT-SS-SS CS
           zf-CCCH   5 lCrffartGtCkyGdrCkFaHg 26 
                       +C +far G+Ck G +C+F Hg
  Pd.00g175450.m01 204 PCLYFAR-GYCKNGTSCRFLHG 224
                       8******.*************8 PP
Sequence ? help Back to Top
Protein Sequence    Length: 333 aa     Download sequence    
MLLSHPFVSD YDTVSALKRR IEYEHRSCFT SVGNFTVEAL KVKRKGCFYH LSDSMLVKNA  60
FSGVNKNWFP YADASDVPRK RLSNFKDSIP LLLEGNERAK EKVTTADQNG SVDFARETSQ  120
NLETGVKHYG NDHCTTSVRE TINRPEREIQ EDRGLCSEGY RVPTTQERKE DGSLEQETHR  180
KTLPCFTSSP VHADPNSAGF GWKPCLYFAR GYCKNGTSCR FLHGGLGDSV VDGGGQMAVG  240
SPSKLEMIDQ SCHEALLRSK LLSSNSKDLL LLLSSWPPEN PQMLRRFRLL QRSSTSARPN  300
SQSAVFSASA GFNGCAAVQS TKAGSGDARP CPS