PlantTFDB - Plant Transcription Factor Database @ CBI, PKU

PlantRegMap/PlantTFDB v5.0

Plant Transcription Factor Database

Transcription Factor Information

Basic Information | Signature Domain | Sequence |

Basic Information? help Back to Top

TF ID

Pd.00g172220.m01

Organism

Prunus domestica

Taxonomic ID

3758

Taxonomic Lineage

cellular organisms; Eukaryota; Viridiplantae; Streptophyta; Streptophytina; Embryophyta; Tracheophyta; Euphyllophyta; Spermatophyta; Magnoliophyta; Mesangiospermae; eudicotyledons; Gunneridae; Pentapetalae; rosids; fabids; Rosales; Rosaceae; Amygdaloideae; Amygdaleae; Prunus

Family

Trihelix

Protein Properties

Length: 288aa MW: 32800.1 Da PI: 10.3591

Description

Trihelix family protein

Gene Model

Gene Model ID	Type	Source	Coding Sequence
Pd.00g172220.m01	genome	GDR	View CDS

Signature Domain? help Back to Top

No.	Domain	Score	E-value	Start	End	HMM Start	HMM End
1	trihelix	48.5	2.3e-15	29	121	1	86
trihelix 1 rWtkqevlaLiearremeerlrrgklkkplWeevskkm.......rergferspkqCkekwenlnkrykkikegekkrtsessstcpyfdqle 86 +W+++ + +Liea e++ +l+rg+l++++Weev++++ +r+ +qCk++ + l+k+yk ++++ ++ + + +s +p+f+ l+ Pd.00g172220.m01 29 CWSEDATFTLIEAWGERHLSLNRGNLRQKHWEEVADAVnashvtaDNPRSRRTDVQCKNRVDTLKKKYKIETARVSDSNGDYTSPWPFFSLLD 121 7***********************************99999966666789*****************99999999999***9886 PP

Sequence ? help Back to Top
Protein Sequence Length: 288 aa Download sequence
MDFVAGSPSP VTAPRPPSKT ASVPVREDCW SEDATFTLIE AWGERHLSLN RGNLRQKHWE 60 EVADAVNASH VTADNPRSRR TDVQCKNRVD TLKKKYKIET ARVSDSNGDY TSPWPFFSLL 120 DSLIGSKFPN PSPPLPRRCS PSPPLPRRSP PSPPLQWTFP VARRSATVKR PAPAFFPAPG 180 DEQSEESEGS PSRSSVGGSR MRDRDREVGC VELAMAIERF AEIYERVEQR KQRQMVELEK 240 QRMQFAKDLE YHRMQLFMET TKHQLRKMKR AKRSSSSPGR QLLRGDEV

Nucleic Localization Signal ? help Back to Top

No.	Start	End	Sequence
1	265	272	LRKMKRAK

Best hit in Arabidopsis thaliana ? help Back to Top
Hit ID	E-value	Description
AT3G58630.1	1e-66	Trihelix family protein