PlantTFDB - Plant Transcription Factor Database @ CBI, PKU

PlantRegMap/PlantTFDB v5.0

Plant Transcription Factor Database

Transcription Factor Information

Basic Information | Signature Domain | Sequence |

Basic Information? help Back to Top

TF ID

Pd.00g169820.m01

Organism

Prunus domestica

Taxonomic ID

3758

Taxonomic Lineage

cellular organisms; Eukaryota; Viridiplantae; Streptophyta; Streptophytina; Embryophyta; Tracheophyta; Euphyllophyta; Spermatophyta; Magnoliophyta; Mesangiospermae; eudicotyledons; Gunneridae; Pentapetalae; rosids; fabids; Rosales; Rosaceae; Amygdaloideae; Amygdaleae; Prunus

Family

MYB

Protein Properties

Length: 554aa MW: 62086.9 Da PI: 9.8326

Description

MYB family protein

Gene Model

Gene Model ID	Type	Source	Coding Sequence
Pd.00g169820.m01	genome	GDR	View CDS

Signature Domain? help Back to Top

No.	Domain	Score	E-value	Start	End	HMM Start	HMM End
1	Myb_DNA-binding	57.1	4.2e-18	10	56	1	48
TSSS-HHHHHHHHHHHHHTTTT-HHHHHHHHTTTS-HHHHHHHHHHHT CS Myb_DNA-binding 1 rgrWTteEdellvdavkqlGggtWktIartmgkgRtlkqcksrwqkyl 48 +g WT+eEd++l++av+++ g++Wk+Ia+++ Rt+ qc +rwqk+l Pd.00g169820.m01 10 KGGWTEEEDKILAHAVQKFNGRNWKKIAECVT-DRTDVQCLHRWQKVL 56 688**************************9.**********986 PP
2	Myb_DNA-binding	55.6	1.2e-17	62	108	1	48
TSSS-HHHHHHHHHHHHHTTTT-HHHHHHHHTTTS-HHHHHHHHHHHT CS Myb_DNA-binding 1 rgrWTteEdellvdavkqlGggtWktIartmgkgRtlkqcksrwqkyl 48 +g W++eEd+l++++v + G++ W+ Ia+ ++ gR +kqc++rw+++l Pd.00g169820.m01 62 KGFWSKEEDDLIIELVMKQGNKKWSEIAKSLP-GRIGKQCRERWHNHL 108 688***************************.***********97 PP
3	Myb_DNA-binding	49.3	1.2e-15	114	156	1	45
TSSS-HHHHHHHHHHHHHTTTT-HHHHHHHHTTTS-HHHHHHHHH CS Myb_DNA-binding 1 rgrWTteEdellvdavkqlGggtWktIartmgkgRtlkqcksrwq 45 r +WT+ E++ l++a+k +G++ W+ Ia+ + gR+++++k++w+ Pd.00g169820.m01 114 RTAWTKAEELTLIEAHKIYGNK-WAEIAKFLH-GRSENSIKNHWN 156 679*****************.*****.*********8 PP

Sequence ? help Back to Top
Protein Sequence Length: 554 aa Download sequence
MAGPIRRSTK GGWTEEEDKI LAHAVQKFNG RNWKKIAECV TDRTDVQCLH RWQKVLNPDL 60 VKGFWSKEED DLIIELVMKQ GNKKWSEIAK SLPGRIGKQC RERWHNHLNP DIKRTAWTKA 120 EELTLIEAHK IYGNKWAEIA KFLHGRSENS IKNHWNSSVK KKLELRSSHT SDMGTQNIKS 180 ESRKRAVVKQ GLDQRANMER NVETCSLDLN LVLGTANRRE SQMQSSDKGN CGWLTKGAAA 240 NKMMKTPPRT VFYDRAAAAC GLNIEQCQET SSNCGRLRDS HNVTANNHYN NICNAAPDYL 300 GFPFSHTRNH KPSDPIHLLP SRPLPRPPQA SLNAGLGVPG CKRTAGYFIN KPVLPVTAQG 360 LYESSSGPQA YEKKKDSGAP VNSKNSSHGR LCYRPFQLED VEFYLENGEF PSTDSYIQTE 420 CSSVSFCTPT SHDTRIFVDC NSPDSTLRSA ARTFEKSPSI IRKRRHSVSR KSVNAANHGD 480 SVCSKEISNN FRNSPHLLGL SPCGRTNSSS MVHSPPRSQK FGDSAVMKSV EKRLEHAFDV 540 EWDSASAVSR TLSP

Sequence ? help Back to Top

Protein Sequence Length: 554 aa Download sequence

MAGPIRRSTK GGWTEEEDKI LAHAVQKFNG RNWKKIAECV TDRTDVQCLH RWQKVLNPDL  60
VKGFWSKEED DLIIELVMKQ GNKKWSEIAK SLPGRIGKQC RERWHNHLNP DIKRTAWTKA  120
EELTLIEAHK IYGNKWAEIA KFLHGRSENS IKNHWNSSVK KKLELRSSHT SDMGTQNIKS  180
ESRKRAVVKQ GLDQRANMER NVETCSLDLN LVLGTANRRE SQMQSSDKGN CGWLTKGAAA  240
NKMMKTPPRT VFYDRAAAAC GLNIEQCQET SSNCGRLRDS HNVTANNHYN NICNAAPDYL  300
GFPFSHTRNH KPSDPIHLLP SRPLPRPPQA SLNAGLGVPG CKRTAGYFIN KPVLPVTAQG  360
LYESSSGPQA YEKKKDSGAP VNSKNSSHGR LCYRPFQLED VEFYLENGEF PSTDSYIQTE  420
CSSVSFCTPT SHDTRIFVDC NSPDSTLRSA ARTFEKSPSI IRKRRHSVSR KSVNAANHGD  480
SVCSKEISNN FRNSPHLLGL SPCGRTNSSS MVHSPPRSQK FGDSAVMKSV EKRLEHAFDV  540
EWDSASAVSR TLSP

Best hit in Arabidopsis thaliana ? help Back to Top
Hit ID	E-value	Description
AT4G32730.1	2e-84	MYB family protein