PlantTFDB
PlantRegMap/PlantTFDB v5.0
Plant Transcription Factor Database
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(e.g., LFY)
Transcription Factor Information
Basic Information | Signature Domain | Sequence | 
Basic Information? help Back to Top
TF ID Pd.00g168470.m01
Organism
Prunus domestica
Taxonomic ID
Taxonomic Lineage
cellular organisms; Eukaryota; Viridiplantae; Streptophyta; Streptophytina; Embryophyta; Tracheophyta; Euphyllophyta; Spermatophyta; Magnoliophyta; Mesangiospermae; eudicotyledons; Gunneridae; Pentapetalae; rosids; fabids; Rosales; Rosaceae; Amygdaloideae; Amygdaleae; Prunus
Family MIKC_MADS
Protein Properties Length: 215aa    MW: 24732.2 Da    PI: 9.8907
Description MIKC_MADS family protein
Gene Model
Gene Model ID Type Source Coding Sequence
Pd.00g168470.m01genomeGDRView CDS
Signature Domain? help Back to Top
Signature Domain
No. Domain Score E-value Start End HMM Start HMM End
1SRF-TF93.21.2e-291059251
                      ---SHHHHHHHHHHHHHHHHHHHHHHHHHHT-EEEEEEE-TTSEEEEEE- CS
            SRF-TF  2 rienksnrqvtfskRrngilKKAeELSvLCdaevaviifsstgklyeyss 51
                      rien + rqvtfskRr g+lKKA+ELSvLCdaeva+iifs++gklye++s
  Pd.00g168470.m01 10 RIENATSRQVTFSKRRSGLLKKAFELSVLCDAEVALIIFSPRGKLYEFAS 59
                      8***********************************************86 PP
2K-box81.71.6e-2777172497
             K-box   4 ssgks..leeakaeslqqelakLkkeienLqreqRhllGedLesLslkeLqqLeqqLekslkkiRskKnellleqieelqkkekelqeenkaL 94 
                       +++++   +++++++l+qe++ + k+ie L+ ++R+llGe+L+s++++eLq++eqqLe+s++++R++K+++++eqie+l++  k+l  en++L
  Pd.00g168470.m01  77 HTNNKpvSTDQNMQHLKQESSSMMKQIELLEVSKRKLLGEGLGSCTIEELQEIEQQLERSVSNVRARKTQVFKEQIEQLKETGKALAAENERL 169
                       4555567899*********************************************************************************** PP

             K-box  95 rkk 97 
                        +k
  Pd.00g168470.m01 170 IEK 172
                       988 PP
Sequence ? help Back to Top
Protein Sequence    Length: 215 aa     Download sequence    
MVRGKTQMRR IENATSRQVT FSKRRSGLLK KAFELSVLCD AEVALIIFSP RGKLYEFASS  60
SMQTTIERYQ KHAKDNHTNN KPVSTDQNMQ HLKQESSSMM KQIELLEVSK RKLLGEGLGS  120
CTIEELQEIE QQLERSVSNV RARKTQVFKE QIEQLKETGK ALAAENERLI EKCGRIQPRQ  180
ASNEQRENLA YIESSPSSDV ETELFIGLPE RRMKR
Best hit in Arabidopsis thaliana ? help Back to Top
Hit ID E-value Description
AT2G45660.11e-87MIKC_MADS family protein