PlantTFDB - Plant Transcription Factor Database @ CBI, PKU

PlantRegMap/PlantTFDB v5.0

Plant Transcription Factor Database

Transcription Factor Information

Basic Information | Signature Domain | Sequence |

Basic Information? help Back to Top

TF ID

Pd.00g168170.m01

Organism

Prunus domestica

Taxonomic ID

3758

Taxonomic Lineage

cellular organisms; Eukaryota; Viridiplantae; Streptophyta; Streptophytina; Embryophyta; Tracheophyta; Euphyllophyta; Spermatophyta; Magnoliophyta; Mesangiospermae; eudicotyledons; Gunneridae; Pentapetalae; rosids; fabids; Rosales; Rosaceae; Amygdaloideae; Amygdaleae; Prunus

Family

GRF

Protein Properties

Length: 440aa MW: 47216.7 Da PI: 9.6547

Description

GRF family protein

Gene Model

Gene Model ID	Type	Source	Coding Sequence
Pd.00g168170.m01	genome	GDR	View CDS

Signature Domain? help Back to Top

No.	Domain	Score	E-value	Start	End	HMM Start	HMM End
1	WRC	70.9	1.5e-22	108	153	1	46
WRC 1 daepgrCrRtDGKkWRCsrrvlegkklCErHlhrgrsrsrkskees 46 d epgrCrRtDGKkWRC ++v++++k+C+ H+hrgr+rsrk++e+s Pd.00g168170.m01 108 DHEPGRCRRTDGKKWRCNKNVVPDQKYCQQHMHRGRQRSRKPVENS 153 679***************************************9985 PP
2	WRC	63.9	2.3e-20	320	361	2	43
WRC 2 aepgrCrRtDGKkWRCsrrvlegkklCErHlhrgrsrsrksk 43 epgrCrRtDGKkWRC+r+vl+ +k+C H+hrg +r+ k + Pd.00g168170.m01 320 LEPGRCRRTDGKKWRCRRDVLPHQKYCGQHIHRGAKRQMKDF 361 59************************************9976 PP
3	QLQ	55.6	1.6e-19	41	75	3	37
QLQ 3 FTaaQlqlLksQilAyKyLaanqPvPpeLlqaiqk 37 +Ta+Ql++L++Q+l+yK++aan+PvP +L+++++k Pd.00g168170.m01 41 LTATQLHELEQQALIYKHFAANLPVPFHLVLPVWK 75 7********************************97 PP

Sequence ? help Back to Top
Protein Sequence Length: 440 aa Download sequence
MEEEGGGKVK LGLGIGVDCY GDDHNGTEEV VGKKKYGGGG LTATQLHELE QQALIYKHFA 60 ANLPVPFHLV LPVWKSVAAS FGSSNAAAIN RQYPSFVGFS ATGFDYRDHE PGRCRRTDGK 120 KWRCNKNVVP DQKYCQQHMH RGRQRSRKPV ENSEVASPSS TKTPKNSEGE LGNSKTNLQI 180 STPKGLQLMA QSYNYVSVSQ GTTMASSGYH ECKKNIRPVT TTSIANIPAN RSASTNPAAV 240 ATTTIAGPTT ATNSSTNENS LNIGVKYNSS NHAGGNCMIR GSSMNVVNVS PGLGFSPKSV 300 LQALLGCNGL NFDNGSGVEL EPGRCRRTDG KKWRCRRDVL PHQKYCGQHI HRGAKRQMKD 360 FQPVAVPSSS AAAMNTARLS QTTAICRKTN CAIPNTNLSI SIPANPPPGR NDERSNSSSD 420 SDTTLTDTSL TACDSSYVSS

Sequence ? help Back to Top

Protein Sequence Length: 440 aa Download sequence

MEEEGGGKVK LGLGIGVDCY GDDHNGTEEV VGKKKYGGGG LTATQLHELE QQALIYKHFA  60
ANLPVPFHLV LPVWKSVAAS FGSSNAAAIN RQYPSFVGFS ATGFDYRDHE PGRCRRTDGK  120
KWRCNKNVVP DQKYCQQHMH RGRQRSRKPV ENSEVASPSS TKTPKNSEGE LGNSKTNLQI  180
STPKGLQLMA QSYNYVSVSQ GTTMASSGYH ECKKNIRPVT TTSIANIPAN RSASTNPAAV  240
ATTTIAGPTT ATNSSTNENS LNIGVKYNSS NHAGGNCMIR GSSMNVVNVS PGLGFSPKSV  300
LQALLGCNGL NFDNGSGVEL EPGRCRRTDG KKWRCRRDVL PHQKYCGQHI HRGAKRQMKD  360
FQPVAVPSSS AAAMNTARLS QTTAICRKTN CAIPNTNLSI SIPANPPPGR NDERSNSSSD  420
SDTTLTDTSL TACDSSYVSS

Best hit in Arabidopsis thaliana ? help Back to Top
Hit ID	E-value	Description
AT4G37740.1	1e-30	GRF family protein