PlantTFDB - Plant Transcription Factor Database @ CBI, PKU

PlantRegMap/PlantTFDB v5.0

Plant Transcription Factor Database

Transcription Factor Information

Basic Information | Signature Domain | Sequence |

Basic Information? help Back to Top

TF ID

Pd.00g160550.m01

Organism

Prunus domestica

Taxonomic ID

3758

Taxonomic Lineage

cellular organisms; Eukaryota; Viridiplantae; Streptophyta; Streptophytina; Embryophyta; Tracheophyta; Euphyllophyta; Spermatophyta; Magnoliophyta; Mesangiospermae; eudicotyledons; Gunneridae; Pentapetalae; rosids; fabids; Rosales; Rosaceae; Amygdaloideae; Amygdaleae; Prunus

Family

GATA

Protein Properties

Length: 629aa MW: 68565.7 Da PI: 4.7749

Description

GATA family protein

Gene Model

Gene Model ID	Type	Source	Coding Sequence
Pd.00g160550.m01	genome	GDR	View CDS

Signature Domain? help Back to Top

No.	Domain	Score	E-value	Start	End	HMM Start	HMM End
1	GATA	48.1	1.6e-15	207	243	1	35
GATA 1 CsnCgttk..TplWRrgpdgnktLCnaCGlyyrkkgl 35 C +Cg ++ Tp++Rrgp+g+++LCnaCGl+++ +g+ Pd.00g160550.m01 207 CKHCGISSksTPMMRRGPSGPRSLCNACGLFWANRGT 243 ***99999*********************9997 PP
2	GATA	48.7	1e-15	483	519	1	35
GATA 1 CsnCgttk..TplWRrgpdgnktLCnaCGlyyrkkgl 35 C++Cg+++ Tp +Rrgp g++tLCnaCGl+++ kg+ Pd.00g160550.m01 483 CQHCGVSEnnTPAMRRGPAGPRTLCNACGLMWANKGT 519 *****99***********************997 PP

Sequence ? help Back to Top
Protein Sequence Length: 629 aa Download sequence
MYGHSEPMTM PNSIPAGGDD DAAGPGVDSI ENAHIHYEPH TLEDGGGVVA VVEDVSSDPV 60 YDVGSSEMRA QPYDGSSQLT LSFRGQVFVF DAVTPEKVQA VLLLLGGSEL SSGPQGAELA 120 SQNQRGTEDF PIRCSQPHRA ASLSRFRQKR KERCFDKKVR YSVRQEVALR MQRNKGQFSS 180 SKKSDGDYSW GNGQESGQDD SHAETSCKHC GISSKSTPMM RRGPSGPRSL CNACGLFWAN 240 RGTLRELSKR TQDHSVTPAE QGEADTKDLN SVTAIDAHNS LVPFSNDDDW LSGGTGLGFE 300 LGEGGGGEAG DLVWREYLMA AVNPQPLQAR PFEEHGRGPI PIEDDEAEYE DGGDDGEVYV 360 FPAVTPEKVQ AVLLLLGGRD VPTGVPTVEV SYDQNTRGVA DTPKRSNLSR RIASLVRFRE 420 KRKERCFDKK IRYTVRKEVA QRMLRKNGQF ASLKQNSGDS GWDSAQSGLQ DGTSRPETVL 480 RRCQHCGVSE NNTPAMRRGP AGPRTLCNAC GLMWANKGTL RDLSKGGRNL TMDHIEPGTP 540 IEVKPLLVEG EFSGNQDEHE TLEGPSKTVI ERSNDASVNL DEQDLHETAE DLTNSLPMGI 600 VSSANDEQEP LVELTNPSDT DLDIPTNFD

Sequence ? help Back to Top

Protein Sequence Length: 629 aa Download sequence

MYGHSEPMTM PNSIPAGGDD DAAGPGVDSI ENAHIHYEPH TLEDGGGVVA VVEDVSSDPV  60
YDVGSSEMRA QPYDGSSQLT LSFRGQVFVF DAVTPEKVQA VLLLLGGSEL SSGPQGAELA  120
SQNQRGTEDF PIRCSQPHRA ASLSRFRQKR KERCFDKKVR YSVRQEVALR MQRNKGQFSS  180
SKKSDGDYSW GNGQESGQDD SHAETSCKHC GISSKSTPMM RRGPSGPRSL CNACGLFWAN  240
RGTLRELSKR TQDHSVTPAE QGEADTKDLN SVTAIDAHNS LVPFSNDDDW LSGGTGLGFE  300
LGEGGGGEAG DLVWREYLMA AVNPQPLQAR PFEEHGRGPI PIEDDEAEYE DGGDDGEVYV  360
FPAVTPEKVQ AVLLLLGGRD VPTGVPTVEV SYDQNTRGVA DTPKRSNLSR RIASLVRFRE  420
KRKERCFDKK IRYTVRKEVA QRMLRKNGQF ASLKQNSGDS GWDSAQSGLQ DGTSRPETVL  480
RRCQHCGVSE NNTPAMRRGP AGPRTLCNAC GLMWANKGTL RDLSKGGRNL TMDHIEPGTP  540
IEVKPLLVEG EFSGNQDEHE TLEGPSKTVI ERSNDASVNL DEQDLHETAE DLTNSLPMGI  600
VSSANDEQEP LVELTNPSDT DLDIPTNFD

Nucleic Localization Signal ? help Back to Top

No.	Start	End	Sequence
1	401	406	DTPKRS

Best hit in Arabidopsis thaliana ? help Back to Top
Hit ID	E-value	Description
AT4G24470.2	3e-79	GATA family protein