PlantTFDB - Plant Transcription Factor Database @ CBI, PKU

PlantRegMap/PlantTFDB v5.0

Plant Transcription Factor Database

Transcription Factor Information

Basic Information | Signature Domain | Sequence |

Basic Information? help Back to Top

TF ID

Pd.00g159190.m01

Organism

Prunus domestica

Taxonomic ID

3758

Taxonomic Lineage

cellular organisms; Eukaryota; Viridiplantae; Streptophyta; Streptophytina; Embryophyta; Tracheophyta; Euphyllophyta; Spermatophyta; Magnoliophyta; Mesangiospermae; eudicotyledons; Gunneridae; Pentapetalae; rosids; fabids; Rosales; Rosaceae; Amygdaloideae; Amygdaleae; Prunus

Family

C3H

Protein Properties

Length: 859aa MW: 95010.9 Da PI: 8.7133

Description

C3H family protein

Gene Model

Gene Model ID	Type	Source	Coding Sequence
Pd.00g159190.m01	genome	GDR	View CDS

Signature Domain? help Back to Top

No.	Domain	Score	E-value	Start	End	HMM Start	HMM End
1	zf-CCCH	21.6	3.9e-07	217	237	5	26
--SGGGGTS--TTTTT-SS-SS CS zf-CCCH 5 lCrffartGtCkyGdrCkFaHg 26 C +fa+ G C++G++CkF H Pd.00g159190.m01 217 YCTDFAK-GKCRRGSSCKFDHH 237 5****.***********7 PP

Sequence ? help Back to Top
Protein Sequence Length: 859 aa Download sequence
MSRSSRKRSS KWDLAEEPQF EDANVQDNGW MGKPGRPFHH KESGREWLSS ELAGSNGSKW 60 SGLETNDMQR SKHDLGLASR EPLPGSRGSH KIESINKGSN RYMDDSMVWD GDGNCSTRMS 120 PGLDEWRQHR SRSPKSGWSR RESVFLDRNR SRSGVSAQLC KDFTAGRCRR ASDCQFLHEG 180 SSNYDDSWES RHRKGGASKY SPDTGDYPLK SGRSSVYCTD FAKGKCRRGS SCKFDHHRAS 240 DGYSKGSMNE RENERRKRDA STERGTDRVP HRSGDIPCKF FAAGNCRNKK YCRFSHHIQA 300 RVSPERKSRD GRWGLSDAGP AWDGPKWSDT VALSDASKLT ADNNGNISVP ELRPSAWSMD 360 DNRWGHGLNN DNQKCADPSV IHEAVQRNEK DTHLWKEDNA GAHVGPPKSR DTEKWLGDMS 420 PDWNYTVQSS NHVGKEEHSG NALGSEPSSQ VHGAASIMQP MIAERSNFLQ NKDMREDGAI 480 PLPYDDRNPI EKNASSRNDL NVSANIMPRQ SFDNSGQSSS AFPFSGLSTV RQSQTLIPTH 540 PQGGGIVKSP QDTLSSESKS VIKLDIGDAK TSLVTGIPQV PNVVGDKELV QLTNLSASLA 600 QFLGNHQQHS QYFAVLNSQN APPPLAKSEG SSEQLSAAAI QPDPVISEKP YDPIHDSREL 660 RNSNNPVFLL PNNAENTSVD GKVDKPSNVV SPSSFPSGAN GSDYLQAHNL VEPKQKNCQL 720 SQVEPLAKSE IVKGNSEFGA QESKNVKEES KSPDIGPLEG TEKDGAEEGK KSKEVKGSRA 780 FKFALVEFVK DLLKPTWRDG QINKDAYKTI VKKVVDKVTS TMQGANIPQT QEKIDHYLSF 840 SKPKLTKLVQ AYVEKMQKG

Sequence ? help Back to Top

Protein Sequence Length: 859 aa Download sequence

MSRSSRKRSS KWDLAEEPQF EDANVQDNGW MGKPGRPFHH KESGREWLSS ELAGSNGSKW  60
SGLETNDMQR SKHDLGLASR EPLPGSRGSH KIESINKGSN RYMDDSMVWD GDGNCSTRMS  120
PGLDEWRQHR SRSPKSGWSR RESVFLDRNR SRSGVSAQLC KDFTAGRCRR ASDCQFLHEG  180
SSNYDDSWES RHRKGGASKY SPDTGDYPLK SGRSSVYCTD FAKGKCRRGS SCKFDHHRAS  240
DGYSKGSMNE RENERRKRDA STERGTDRVP HRSGDIPCKF FAAGNCRNKK YCRFSHHIQA  300
RVSPERKSRD GRWGLSDAGP AWDGPKWSDT VALSDASKLT ADNNGNISVP ELRPSAWSMD  360
DNRWGHGLNN DNQKCADPSV IHEAVQRNEK DTHLWKEDNA GAHVGPPKSR DTEKWLGDMS  420
PDWNYTVQSS NHVGKEEHSG NALGSEPSSQ VHGAASIMQP MIAERSNFLQ NKDMREDGAI  480
PLPYDDRNPI EKNASSRNDL NVSANIMPRQ SFDNSGQSSS AFPFSGLSTV RQSQTLIPTH  540
PQGGGIVKSP QDTLSSESKS VIKLDIGDAK TSLVTGIPQV PNVVGDKELV QLTNLSASLA  600
QFLGNHQQHS QYFAVLNSQN APPPLAKSEG SSEQLSAAAI QPDPVISEKP YDPIHDSREL  660
RNSNNPVFLL PNNAENTSVD GKVDKPSNVV SPSSFPSGAN GSDYLQAHNL VEPKQKNCQL  720
SQVEPLAKSE IVKGNSEFGA QESKNVKEES KSPDIGPLEG TEKDGAEEGK KSKEVKGSRA  780
FKFALVEFVK DLLKPTWRDG QINKDAYKTI VKKVVDKVTS TMQGANIPQT QEKIDHYLSF  840
SKPKLTKLVQ AYVEKMQKG

Best hit in Arabidopsis thaliana ? help Back to Top
Hit ID	E-value	Description
AT2G33835.1	2e-11	C3H family protein