PlantTFDB - Plant Transcription Factor Database @ CBI, PKU

PlantRegMap/PlantTFDB v5.0

Plant Transcription Factor Database

Transcription Factor Information

Basic Information | Signature Domain | Sequence |

Basic Information? help Back to Top

TF ID

Pd.00g153660.m01

Organism

Prunus domestica

Taxonomic ID

3758

Taxonomic Lineage

cellular organisms; Eukaryota; Viridiplantae; Streptophyta; Streptophytina; Embryophyta; Tracheophyta; Euphyllophyta; Spermatophyta; Magnoliophyta; Mesangiospermae; eudicotyledons; Gunneridae; Pentapetalae; rosids; fabids; Rosales; Rosaceae; Amygdaloideae; Amygdaleae; Prunus

Family

LBD

Protein Properties

Length: 428aa MW: 47679 Da PI: 4.3597

Description

LBD family protein

Gene Model

Gene Model ID	Type	Source	Coding Sequence
Pd.00g153660.m01	genome	GDR	View CDS

Signature Domain? help Back to Top

No.	Domain	Score	E-value	Start	End	HMM Start	HMM End
1	DUF260	61	3.2e-19	10	79	1	69
DUF260 1 aCaaCkvlrrkCakdCvlapyfpaeq.pkkfanvhklFGasnvlkllkalpeeeredamsslvyeAeara 69 +C aCk+l+++C+++C++apyf +e+ +f +h +FGa++++++l+ lp +er a ++++eA+ ra Pd.00g153660.m01 10 PCGACKFLKKRCKRGCIFAPYFMHEEaITDFSSIHNVFGANKMSRILSMLPMSERAVASWTMTFEAHSRA 79 7*******************999856*************************************997 PP
2	DUF260	55.8	1.4e-17	184	257	28	101
DUF260 28 kkfanvhklFGasnvlkllkalpeeeredamsslvyeAearardPvyGavgvilklqqqleqlkaelallkeel 101 +f +h +FGas+++++l+ lp +er a ++++eA+ara dP yG+v+ il+lq+q+ + +a+l++++e+l Pd.00g153660.m01 184 TDFSTIHNVFGASKMSRILSMLPMSERAVASWTMTFEAHARAVDPTYGCVSYILDLQEQVLNIQAQLDEAHEQL 257 7899*****************************************************************99985 PP

Sequence ? help Back to Top
Protein Sequence Length: 428 aa Download sequence
MSSRTRTFNP CGACKFLKKR CKRGCIFAPY FMHEEAITDF SSIHNVFGAN KMSRILSMLP 60 MSERAVASWT MTFEAHSRAV LNIQAQLDEA HEQLACAIAP VADPNQDLEN SIEQSEVANP 120 TEQAAVAKPT EFESLPQFSF TYTNNVYNEN MNLNYHVSGS YKNTVNIPTE NVADGWVNNE 180 EAITDFSTIH NVFGASKMSR ILSMLPMSER AVASWTMTFE AHARAVDPTY GCVSYILDLQ 240 EQVLNIQAQL DEAHEQLSRA VAPVANPNQD LENSNEQSEV ANPTEQAAVA KPTEFESLPQ 300 FSFTHTNNVD NENMNLNYHV SGSYKNTVNI PTENVTDGWV NNEGTSSMSF FDMEWSFEDV 360 DELLVDPWCP NMGKVQALTA STPAADEWLV TERAKAQWKK YKAMVDDATL KTDISAFGFS 420 CSPQETAG

Sequence ? help Back to Top

Protein Sequence Length: 428 aa Download sequence

MSSRTRTFNP CGACKFLKKR CKRGCIFAPY FMHEEAITDF SSIHNVFGAN KMSRILSMLP  60
MSERAVASWT MTFEAHSRAV LNIQAQLDEA HEQLACAIAP VADPNQDLEN SIEQSEVANP  120
TEQAAVAKPT EFESLPQFSF TYTNNVYNEN MNLNYHVSGS YKNTVNIPTE NVADGWVNNE  180
EAITDFSTIH NVFGASKMSR ILSMLPMSER AVASWTMTFE AHARAVDPTY GCVSYILDLQ  240
EQVLNIQAQL DEAHEQLSRA VAPVANPNQD LENSNEQSEV ANPTEQAAVA KPTEFESLPQ  300
FSFTHTNNVD NENMNLNYHV SGSYKNTVNI PTENVTDGWV NNEGTSSMSF FDMEWSFEDV  360
DELLVDPWCP NMGKVQALTA STPAADEWLV TERAKAQWKK YKAMVDDATL KTDISAFGFS  420
CSPQETAG

Best hit in Arabidopsis thaliana ? help Back to Top
Hit ID	E-value	Description
AT3G58190.1	5e-26	LBD family protein