PlantTFDB
PlantRegMap/PlantTFDB v5.0
Plant Transcription Factor Database
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(e.g., LFY)
Transcription Factor Information
Basic Information | Signature Domain | Sequence | 
Basic Information? help Back to Top
TF ID Pd.00g143670.m01
Organism
Prunus domestica
Taxonomic ID
Taxonomic Lineage
cellular organisms; Eukaryota; Viridiplantae; Streptophyta; Streptophytina; Embryophyta; Tracheophyta; Euphyllophyta; Spermatophyta; Magnoliophyta; Mesangiospermae; eudicotyledons; Gunneridae; Pentapetalae; rosids; fabids; Rosales; Rosaceae; Amygdaloideae; Amygdaleae; Prunus
Family YABBY
Protein Properties Length: 158aa    MW: 17492.6 Da    PI: 9.6571
Description YABBY family protein
Gene Model
Gene Model ID Type Source Coding Sequence
Pd.00g143670.m01genomeGDRView CDS
Signature Domain? help Back to Top
Signature Domain
No. Domain Score E-value Start End HMM Start HMM End
1YABBY172.72.4e-53113034170
             YABBY  34 vvtvrCGhCtsllsvnlakasqllaaeshldeslkeelleelkveeenlksnvekeesastsvsseklsenedeevprvppvirPPekrqrvP 126
                       +vtvrCGhC++llsvn+  + q  a   +      ++ l++++ ++e+ ++   +++s++ s+  + +++ e ++ pr+ p irPPekrqrvP
  Pd.00g143670.m01   1 MVTVRCGHCANLLSVNMGASLQSNALPPQ-----DPQ-LQKHHLSSEDSNKSCGSSSSSKCSKFGHPFESVELHDQPRISP-IRPPEKRQRVP 86 
                       69***************999988877776.....233.3333333333333344444444444444667888999999999.9********** PP

             YABBY 127 saynrfikeeiqrikasnPdishreafsaaaknWahfPkihfgl 170
                       saynrfikeeiqrikasnPdishreafs+aaknWahfP+ihfgl
  Pd.00g143670.m01  87 SAYNRFIKEEIQRIKASNPDISHREAFSTAAKNWAHFPHIHFGL 130
                       ******************************************97 PP
Sequence ? help Back to Top
Protein Sequence    Length: 158 aa     Download sequence    
MVTVRCGHCA NLLSVNMGAS LQSNALPPQD PQLQKHHLSS EDSNKSCGSS SSSKCSKFGH  60
PFESVELHDQ PRISPIRPPE KRQRVPSAYN RFIKEEIQRI KASNPDISHR EAFSTAAKNW  120
AHFPHIHFGL KLDGSKQPKP DQTFAGGDQG TQKSSGFY
Best hit in Arabidopsis thaliana ? help Back to Top
Hit ID E-value Description
AT1G08465.19e-58YABBY family protein